VMCUB1_URINARY_TRACT


Available Data

  • Vendor Karyotype
  • Amplicon Architect Prediction
  • Shatterseek Prediction

ID Value
ATCC None
DSMZ ACC-400
Cellosaurus None
Cosmic 909780.0

Property Value
% Polyploidy 4.0
Ploidy Classification hypertriploid
Modal Chromosome Number 80.0
Modal Range Numeric 71-80
Marker Chromosomes Average Field 7.0
Primary or Metastasis Primary
Count of SV's 10

Details

ecDNA Present (Y/N/P): N

HSR Classification: N

ATCC Karyotype: No data

DSMZ Karyotype: human hypertriploid karyotype with 4% polyploidy - 80<3n>XX/XX?Y, +1, +1, +5, +6, +7, +9, -11, +15, -18, +19, +20, +22, +22, +7mar, del(1)(q21), del(1)(q11), der(1;6)(p10;q10)x2, add(3)(p21.3)x2, i(5p), der(6)t(1;6)(q11;q22), ?inv(7)(p15q35), i(9q), del(10)(p11), del(10)(q?22?24), add(12)(p11)x2, add(15)(p11), add(21)(p11) - sideline with i(5q)

Heterogeneity Indications and Other Notes: No data

Download Breakpoint Edges CSV

Prediction

ecDNA Amplicon Predicted: N

Predicted Amplicon Classes: ['Complex non-cyclic', 'Linear amplification']

Predicted Genes on ecDNA

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Predicted Features

Class Amplicon Complexity Score
Complex non-cyclic 1 0.7060977825
Image 1

Class Amplicon Complexity Score
Linear amplification 2 0.8262374301
Image 2

Class Amplicon Complexity Score
Complex non-cyclic 3 1.926412523
Image 3

Prediction

ecDNA: None


Prediction

Shatterseek Prediction: High Confidence

Shatterseek High Confidence Chromosomes: 12

Shatterseek Low Confidence Chromosomes: 3, 15, 18