UACC893_BREAST


Available Data

  • Vendor Karyotype
  • Amplicon Architect Prediction

ID Value
ATCC CRL-1902
DSMZ None
Cellosaurus UACC-893
Cosmic 909778.0

Property Value
% Polyploidy None
Ploidy Classification hypotriploid
Modal Chromosome Number 62.0
Modal Range Numeric 51-65
Marker Chromosomes Average Field None
Primary or Metastasis Primary
Count of SV's 0

Details

ecDNA Present (Y/N/P): No data

HSR Classification: N

ATCC Karyotype: modal number = 62; range = 51 to 65

DSMZ Karyotype: No data

Heterogeneity Indications and Other Notes: No data

Download Breakpoint Edges CSV

Prediction

ecDNA Amplicon Predicted: Y

Predicted Amplicon Classes: ['Linear amplification', 'ecDNA', 'Complex non-cyclic']

Predicted Genes on ecDNA

['CASC3', 'CASKIN2', 'CDC6', 'CDK12', 'CSF3', 'ERBB2', 'FBXL20', 'GRB7', 'GSDMA', 'GSDMB', 'IKZF3', 'LLGL2', 'LRRC3C', 'MED1', 'MED24', 'MIEN1', 'MSL1', 'MYO15B', 'NEUROD2', 'NR1D1', 'ORMDL3', 'PGAP3', 'PNMT', 'PPP1R1B', 'PSMD3', 'RAPGEFL1', 'RARA', 'RECQL5', 'SAP30BP', 'SMIM5', 'SMIM6', 'SNORD124', 'STARD3', 'TCAP', 'THRA', 'TMEM94', 'TSEN54', 'WIPF2', 'ZPBP2', 'ADRM1', 'ANKRD60', 'APCDD1L', 'APCDD1L-DT', 'ARFGAP1', 'ATP5F1E', 'AURKA', 'BHLHE23', 'BIRC7', 'BMP7', 'BMP7-AS1', 'C20orf197', 'C20orf85', 'CABLES2', 'CASS4', 'CBLN4', 'CDH26', 'CDH4', 'COL20A1', 'COL9A3', 'CSTF1', 'CTCFL', 'CTSZ', 'DIDO1', 'DPH3P1', 'EDN3', 'FAM209A', 'FAM209B', 'FAM210B', 'FAM217B', 'FLJ16779', 'GATA5', 'GCNT7', 'GID8', 'GNAS', 'GNAS-AS1', 'HAR1A', 'HAR1B', 'HRH3', 'LAMA5', 'LAMA5-AS1', 'LSM14B', 'MC3R', 'MRGBP', 'MTG2', 'MTRNR2L3', 'NELFCD', 'NKAIN4', 'NKILA', 'NPEPL1', 'NTSR1', 'OGFR', 'OGFR-AS1', 'OSBPL2', 'PCK1', 'PHACTR3', 'PHACTR3-AS1', 'PMEPA1', 'PPP1R3D', 'PPP4R1L', 'PRELID3B', 'PSMA7', 'RAB22A', 'RAE1', 'RBBP8NL', 'RBM38', 'RPS21', 'RTF2', 'SLC17A9', 'SLCO4A1', 'SLCO4A1-AS1', 'SLMO2-ATP5E', 'SNORA117', 'SPO11', 'SS18L1', 'STX16', 'STX16-NPEPL1', 'SYCP2', 'TAF4', 'TCFL5', 'TFAP2C', 'TUBB1', 'VAPB', 'YTHDF1', 'ZBP1', 'ZNF831']

Predicted Features

Class Amplicon Complexity Score
Linear amplification 1 0.9171962937
Image 1

Class Amplicon Complexity Score
Linear amplification 2 0.3322553718
Image 2

Class Amplicon Complexity Score
Linear amplification 3 0.6243058416
Image 3

Class Amplicon Complexity Score
ecDNA 4 0.7785218242
Image 4

Class Amplicon Complexity Score
Linear amplification 5 0.793714386
Image 5

Class Amplicon Complexity Score
Complex non-cyclic 6 1.090863628
Image 6

Class Amplicon Complexity Score
ecDNA 7 0.6927867783
Image 7

Prediction

ecDNA: None


Prediction

No data