UACC812_BREAST


Available Data

  • Vendor Karyotype
  • ecDNA Presence Verification from Literature
  • Amplicon Architect Prediction

ID Value
ATCC CRL-1897
DSMZ None
Cellosaurus UACC-812
Cosmic 910910.0

Property Value
% Polyploidy None
Ploidy Classification hypotriploid
Modal Chromosome Number None
Modal Range Numeric 58-64
Marker Chromosomes Average Field None
Primary or Metastasis Primary
Count of SV's 0

Details

ecDNA Present (Y/N/P): N

Literature source: https://onlinelibrary.wiley.com/doi/full/10.1002/1098-2264%28200007%2928%3A3%3C308%3A%3AAID-GCC9%3E3.0.CO%3B2-B

HSR Classification: N

ATCC Karyotype: range = 58 to 64; abnormal banding region in 3p

DSMZ Karyotype: No data

Heterogeneity Indications and Other Notes: No data

Download Breakpoint Edges CSV

Prediction

ecDNA Amplicon Predicted: Y

Predicted Amplicon Classes: ['ecDNA', 'Linear amplification', 'Complex non-cyclic']

Predicted Genes on ecDNA

['ARL11', 'C13orf42', 'CLDN10', 'CLDN10-AS1', 'CTAGE10P', 'DCT', 'DLEU2', 'DZIP1', 'EBPL', 'FAM124A', 'GPC5', 'GPC5-AS2', 'GPC6', 'GPC6-AS1', 'GUCY1B2', 'INTS6', 'KPNA3', 'OR7E156P', 'PCDH9', 'PCDH9-AS2', 'PCDH9-AS3', 'PCDH9-AS4', 'PHF11', 'RCBTB1', 'SERPINE3', 'SETDB2-PHF11', 'SNORA107', 'SPRYD7', 'TGDS', 'TRIM13', 'ARHGAP44', 'ARL5C', 'C17orf98', 'CACNB1', 'CASC3', 'CDC6', 'CDK12', 'CISD3', 'CSF3', 'CWC25', 'ELAC2', 'EPOP', 'ERBB2', 'FBXL20', 'FBXO47', 'GJD3', 'GRB7', 'GSDMA', 'GSDMB', 'IKZF3', 'LASP1', 'LRRC37A11P', 'LRRC3C', 'MAGI3', 'MED1', 'MED24', 'MIEN1', 'MLLT6', 'MSL1', 'NEUROD2', 'NR1D1', 'ORMDL3', 'PCGF2', 'PGAP3', 'PIP4K2B', 'PLXDC1', 'PNMT', 'PPP1R1B', 'PSMB3', 'PSMD3', 'RAPGEFL1', 'RARA', 'RARA-AS1', 'RDM1P5', 'RPL19', 'RPL23', 'SNORA21', 'SNORA21B', 'SNORD124', 'SRCIN1', 'STAC2', 'STARD3', 'TCAP', 'THRA', 'WIPF2', 'ZBTB18', 'ZPBP2', 'CYSLTR2']

Predicted Features

Class Amplicon Complexity Score
ecDNA 1 1.5490853
Image 1

Class Amplicon Complexity Score
ecDNA 1 1.701989012
Image 2

Class Amplicon Complexity Score
ecDNA 1 0.9905400938
Image 3

Class Amplicon Complexity Score
ecDNA 1 0.3390868338
Image 4

Class Amplicon Complexity Score
Linear amplification 2 0.9544450923
Image 5

Class Amplicon Complexity Score
Complex non-cyclic 3 1.987513819
Image 6

Class Amplicon Complexity Score
Linear amplification 4 1.249973614
Image 7

Class Amplicon Complexity Score
Linear amplification 5 0.6009812758
Image 8

Class Amplicon Complexity Score
Linear amplification 6 0.844175802
Image 9

Prediction

ecDNA: None


Prediction

No data