U251MG_CENTRAL_NERVOUS_SYSTEM


Available Data

  • ecDNA Presence Verification from Literature
  • Amplicon Architect Prediction
  • Shatterseek Prediction

ID Value
ATCC None
DSMZ None
Cellosaurus None
Cosmic 905983.0

Details

ecDNA Present (Y/N/P): N

Literature source: https://www.nature.com/articles/nature21356

HSR Classification: No data

ATCC Karyotype: No data

DSMZ Karyotype: No data

Heterogeneity Indications and Other Notes: No data

Download Breakpoint Edges CSV

Prediction

ecDNA Amplicon Predicted: Y

Predicted Amplicon Classes: ['Complex non-cyclic', 'ecDNA', 'Linear amplification']

Predicted Genes on ecDNA

['CHIC2', 'GSX2', 'LNX1', 'LNX1-AS2', 'PDGFRA', 'RPL21P44']

Predicted Features

Class Amplicon Complexity Score
Complex non-cyclic 1 1.504892587
Image 1

Class Amplicon Complexity Score
ecDNA 2 0.6777448603
Image 2

Class Amplicon Complexity Score
Linear amplification 3 0.781000107
Image 3

Prediction

ecDNA: None


Prediction

Shatterseek Prediction: No Chromothripsis Detected

Shatterseek High Confidence Chromosomes: None

Shatterseek Low Confidence Chromosomes: None