TE1_OESOPHAGUS


Available Data

  • Amplicon Architect Prediction
  • Circle Hunter Prediction

ID Value
ATCC None
DSMZ None
Cellosaurus None
Cosmic 753621.0

Details

ecDNA Present (Y/N/P): No data

HSR Classification: No data

ATCC Karyotype: No data

DSMZ Karyotype: No data

Heterogeneity Indications and Other Notes: No data

Download Breakpoint Edges CSV

Prediction

ecDNA Amplicon Predicted: Y

Predicted Amplicon Classes: ['Linear amplification', 'ecDNA']

Predicted Genes on ecDNA

['ANGPTL5', 'ARHGAP42', 'BIRC2', 'BIRC3', 'CEP126', 'CFAP300', 'CNTN5', 'DCUN1D5', 'DYNC2H1', 'MMP1', 'MMP10', 'MMP12', 'MMP13', 'MMP20', 'MMP27', 'MMP3', 'MMP7', 'MMP8', 'PGR', 'PGR-AS1', 'SNORD13I', 'TMEM123', 'TRPC6', 'WTAPP1', 'YAP1']

Predicted Features

Class Amplicon Complexity Score
Linear amplification 1 1.004014043
Image 1

Class Amplicon Complexity Score
Linear amplification 2 0.796740213
Image 2

Class Amplicon Complexity Score
ecDNA 3 1.413562738
Image 3

Class Amplicon Complexity Score
Linear amplification 4 6e-10
Image 4

Class Amplicon Complexity Score
Linear amplification 6 0.6221406361
Image 5

Class Amplicon Complexity Score
Linear amplification 7 1.183635602
Image 6

Class Amplicon Complexity Score
Linear amplification 8 0.0
Image 7

Prediction

ecDNA: negative


Prediction

No data