TC71_BONE
Available Data
- Vendor Karyotype
- Amplicon Architect Prediction
| Property | Value |
|---|---|
| % Polyploidy | 4.0 |
| Ploidy Classification | hypertriploid |
| Modal Chromosome Number | None |
| Modal Range Numeric | 70-80 |
| Marker Chromosomes Average Field | 6.0 |
| Primary or Metastasis | Primary |
| Count of SV's | 10 |
Details
ecDNA Present (Y/N/P): N
HSR Classification: N
ATCC Karyotype: No data
DSMZ Karyotype: human flat-moded hypertriploid karyotype with 4% polyploidy - 70-80<3n>XX, -Y, +1, +2, -3, +6, +8, -9, +11, -17, +21, +2-11 mar, add(3)(q29), add(6)(q25)x2-3, del(8)(p22), add(8)(p22), del(9(p24), t(11;22)(q24;q12)x2, i(13q)x1-2, add(14)(p11) - sideline with der(2)t(2;3)(p23;p11), add(11)(p15)x2 - carries two copies of t(11;22) effecting EWS-FLI-1 fusion, yielding type 1 (shorter) product - broadly resembles published karyotype
Heterogeneity Indications and Other Notes: No data
Download Breakpoint Edges CSV
Prediction
ecDNA Amplicon Predicted: Y
Predicted Amplicon Classes: ['ecDNA']
Predicted Genes on ecDNA
['CASC11', 'CASC19', 'CASC21', 'CASC8', 'CCAT1', 'CCAT2', 'FER1L6', 'FER1L6-AS1', 'FER1L6-AS2', 'LRATD2', 'MTSS1', 'MYC', 'NDUFB9', 'NSMCE2', 'PCAT1', 'PCAT2', 'POU5F1B', 'PRNCR1', 'PVT1', 'RNF139', 'RNF139-AS1', 'SQLE', 'TAF2', 'TATDN1', 'TMEM65', 'TMEM75', 'TRMT12', 'WASHC5', 'ZNF572']
Predicted Features
View Feature 1 - TC71_BONE ecDNA
| Class | Amplicon | Complexity Score |
|---|---|---|
| ecDNA | 1 | 0.8313002272 |
Prediction
ecDNA: None
Prediction
No data