SW620_LARGE_INTESTINE


Available Data

  • Vendor Karyotype
  • ecDNA Presence Verification from Literature
  • Amplicon Architect Prediction

ID Value
ATCC CCL-227
DSMZ None
Cellosaurus SW620
Cosmic 905962.0

Property Value
% Polyploidy None
Ploidy Classification hyperdiploid
Modal Chromosome Number 50.0
Modal Range Numeric 45-53
Marker Chromosomes Average Field 11.0
Primary or Metastasis Metastasis
Count of SV's 2

Details

ecDNA Present (Y/N/P): N

Literature source: https://www.nature.com/articles/nature21356

HSR Classification: Y

ATCC Karyotype: modal number = 50; range = 45 to 53 The stemline chromosome number is hyperdiploid with the 2S component occurring at 12% and 11 marker chromosomes were common to S metaphases. One of the 11 markers [7 (7p; 11p)] was disomic., M1 was probably an HSR but the origin of the chromosome could not be identified.

DSMZ Karyotype: No data

Heterogeneity Indications and Other Notes: M1 was probably an HSR but the origin of the chromosome could not be identified

Download Breakpoint Edges CSV

Prediction

ecDNA Amplicon Predicted: Y

Predicted Amplicon Classes: ['BFB', 'ecDNA', 'Linear amplification']

Predicted Genes on ecDNA

['CASC11', 'MYC', 'PVT1']

Predicted Features

Class Amplicon Complexity Score
BFB 1 1.058176761
Image 1

Class Amplicon Complexity Score
ecDNA 2 1.075693288
Image 2

Class Amplicon Complexity Score
Linear amplification 3 0.0096744069
Image 3

Class Amplicon Complexity Score
Linear amplification 4 0.8667154697
Image 4

Prediction

ecDNA: None


Prediction

No data