SUM149PT_BREAST


Available Data

  • Amplicon Architect Prediction
  • Circle Hunter Prediction

Details

ecDNA Present (Y/N/P): No data

HSR Classification: No data

ATCC Karyotype: No data

DSMZ Karyotype: No data

Heterogeneity Indications and Other Notes: No data

Download Breakpoint Edges CSV

Prediction

ecDNA Amplicon Predicted: Y

Predicted Amplicon Classes: ['Linear amplification', 'ecDNA', 'Complex non-cyclic']

Predicted Genes on ecDNA

['AKAP5', 'HSPA2', 'MTHFD1', 'PPP1R36', 'TEX21P', 'ZBTB1', 'ZBTB25', 'NUMB', 'PAPLN', 'PSEN1', 'AIP', 'ANKRD13D', 'CABP2', 'CABP4', 'CARNS1', 'CDK2AP2', 'CLCF1', 'CORO1B', 'GPR152', 'PITPNM1', 'POLD4', 'PPP1CA', 'PTPRCAP', 'RAD9A', 'RPS6KB2', 'SSH3', 'TBC1D10C', 'TMEM134']

Predicted Features

Class Amplicon Complexity Score
Linear amplification 10 0.6239355079
Image 1

Class Amplicon Complexity Score
Linear amplification 11 0.0
Image 2

Class Amplicon Complexity Score
ecDNA 12 0.6279582515
Image 3

Class Amplicon Complexity Score
ecDNA 13 0.6272756194
Image 4

Class Amplicon Complexity Score
Linear amplification 14 0.0
Image 5

Class Amplicon Complexity Score
Linear amplification 1 0.8817757271
Image 6

Class Amplicon Complexity Score
Linear amplification 2 0.6196033408
Image 7

Class Amplicon Complexity Score
ecDNA 3 0.617345493
Image 8

Class Amplicon Complexity Score
Complex non-cyclic 4 0.9660345933
Image 9

Class Amplicon Complexity Score
Linear amplification 5 1e-10
Image 10

Class Amplicon Complexity Score
Linear amplification 6 0.0
Image 11

Class Amplicon Complexity Score
Complex non-cyclic 7 1.429640251
Image 12

Class Amplicon Complexity Score
Linear amplification 8 1e-10
Image 13

Class Amplicon Complexity Score
Linear amplification 9 0.0027296345
Image 14

Prediction

ecDNA: negative


Prediction

No data