SNU475_LIVER
Available Data
- Vendor Karyotype
- Amplicon Architect Prediction
| Property | Value |
|---|---|
| % Polyploidy | None |
| Ploidy Classification | hypotriploid |
| Modal Chromosome Number | 61.0 |
| Modal Range Numeric | 58-68 |
| Marker Chromosomes Average Field | None |
| Primary or Metastasis | Primary |
| Count of SV's | 0 |
Details
ecDNA Present (Y/N/P): P
HSR Classification: P
ATCC Karyotype: aneuploid; modal number = 61
DSMZ Karyotype: No data
Heterogeneity Indications and Other Notes: No data
Download Breakpoint Edges CSV
Prediction
ecDNA Amplicon Predicted: Y
Predicted Amplicon Classes: ['ecDNA']
Predicted Genes on ecDNA
['ACY3', 'AIP', 'ALDH3B1', 'ALDH3B2', 'AMN1', 'ANKRD13D', 'ANO1', 'C11orf24', 'C11orf72', 'C11orf80', 'C11orf86', 'CABP2', 'CABP4', 'CARNS1', 'CCND1', 'CDK2AP2', 'CHKA', 'CLCF1', 'CORO1B', 'CPT1A', 'CTTN', 'DDX11', 'DDX11-AS1', 'DENND5B', 'DENND5B-AS1', 'DOC2GP', 'ETFBKMT', 'FADD', 'FAM86C2P', 'FGF19', 'FGF3', 'FGF4', 'FLJ13224', 'GAL', 'GPR152', 'GRK2', 'GSTP1', 'IGHMBP2', 'KDM2A', 'KMT5B', 'LRFN4', 'LRP5', 'LTO1', 'MRGPRD', 'MRGPRF', 'MRGPRF-AS1', 'MRPL21', 'MYEOV', 'NDUFS8', 'NDUFV1', 'NUDT8', 'OVOS2', 'PC', 'PITPNM1', 'POLD4', 'PPFIA1', 'PPP1CA', 'PPP6R3', 'PTPRCAP', 'RAD9A', 'RCE1', 'RHOD', 'RPS6KB2', 'SHANK2', 'SHANK2-AS1', 'SINHCAF', 'SMIM38', 'SSH3', 'SYT12', 'TBC1D10C', 'TBX10', 'TCIRG1', 'TESMIN', 'TMEM134', 'TPCN2', 'UNC93B1']
Predicted Features
View Feature 1 - SNU475_LIVER ecDNA
| Class | Amplicon | Complexity Score |
|---|---|---|
| ecDNA | 1 | 1.182972445 |
Prediction
ecDNA: None
Prediction
No data