SNU1_STOMACH


Available Data

  • Vendor Karyotype
  • Amplicon Architect Prediction
  • Shatterseek Prediction

ID Value
ATCC CRL-5971
DSMZ None
Cellosaurus SNU-1
Cosmic 908444.0

Property Value
% Polyploidy 42.0
Ploidy Classification hyperdiploid
Modal Chromosome Number 47.0
Modal Range Numeric 47-57
Marker Chromosomes Average Field None
Primary or Metastasis Metastasis
Count of SV's 2

Details

ecDNA Present (Y/N/P): Y

HSR Classification: N

ATCC Karyotype: SNU-1 is a near-diploid cell line with a modal chromosome number of 47; double minute chromosomes were found in 28% of the cells. They have a reported colony-forming efficiency of 1.9% in semisolid medium and a population doubling time of 26 hours. The cells grow as floating aggregates of round cell clusters. This is a hyperdiploid human cell line with the modal chromosome number of 47 occurring in 94% of cells. Higher ploidies occurred at 42%, which is very high. The karyotype of 47,XY,t(1;4) (q24;q33), +M1 is very uniform and stable. M1 is an F- sized small metacentric chromosome.

DSMZ Karyotype: No data

Heterogeneity Indications and Other Notes: double minute chromosomes were found in 28% of the cells.

Download Breakpoint Edges CSV

Prediction

ecDNA Amplicon Predicted: N

Predicted Amplicon Classes: ['Complex non-cyclic']

Predicted Genes on ecDNA

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Predicted Features

Class Amplicon Complexity Score
Complex non-cyclic 1 1.16138359
Image 1

Prediction

ecDNA: None


Prediction

Shatterseek Prediction: High Confidence

Shatterseek High Confidence Chromosomes: 4, 9

Shatterseek Low Confidence Chromosomes: None