SNU182_LIVER


Available Data

  • Vendor Karyotype
  • Amplicon Architect Prediction
  • Shatterseek Prediction

ID Value
ATCC CRL-2235
DSMZ None
Cellosaurus SNU-182
Cosmic 1240216.0

Property Value
% Polyploidy None
Ploidy Classification hypertriploid
Modal Chromosome Number 70.0
Modal Range Numeric 70-80
Marker Chromosomes Average Field None
Primary or Metastasis Primary
Count of SV's 0

Details

ecDNA Present (Y/N/P): P

HSR Classification: P

ATCC Karyotype: aneuploid; modal number = 70

DSMZ Karyotype: No data

Heterogeneity Indications and Other Notes: No data

Download Breakpoint Edges CSV

Prediction

ecDNA Amplicon Predicted: Y

Predicted Amplicon Classes: ['Linear amplification', 'BFB', 'ecDNA']

Predicted Genes on ecDNA

['ADORA2B', 'ALKBH5', 'ARHGAP44', 'ATPAF2', 'B9D1', 'CCDC144A', 'CCDC144B', 'CDRT1', 'CDRT15', 'CDRT15P1', 'CDRT15P2', 'CDRT3', 'CDRT4', 'CDRT7', 'CDRT8', 'CENPV', 'COPS3', 'COX10', 'COX10-AS1', 'DNAH9', 'DRC3', 'DRG2', 'ELAC2', 'EPN2', 'EPN2-AS1', 'EPN2-IT1', 'EVPLL', 'FAM106A', 'FAM106C', 'FAM83G', 'FBXW10', 'FLCN', 'FLII', 'FOXO3B', 'GID4', 'GRAP', 'GRAPL', 'HS3ST3A1', 'HS3ST3B1', 'KRT16P1', 'KRT16P2', 'KRT17P1', 'KRT17P2', 'KRT17P5', 'LGALS9C', 'LLGL1', 'LRRC75A', 'MAP2K4', 'MED9', 'MEIS3P1', 'MGC12916', 'MIEF2', 'MPRIP', 'MYO15A', 'MYOCD', 'MYOCD-AS1', 'NCOR1', 'NT5M', 'PEMT', 'PIGL', 'PLD6', 'PMP22', 'PRPSAP2', 'RAI1', 'RAI1-AS1', 'RASD1', 'SHISA6', 'SHMT1', 'SLC5A10', 'SMCR2', 'SMCR5', 'SMCR8', 'SNHG29', 'SNORD163', 'SNORD3A', 'SNORD3B-1', 'SNORD3B-2', 'SNORD3C', 'SNORD3D', 'SNORD49A', 'SNORD49B', 'SNORD65', 'SREBF1', 'TBC1D26', 'TBC1D27P', 'TBC1D28', 'TEKT3', 'TNFRSF13B', 'TOM1L2', 'TOP3A', 'TRIM16', 'TRIM16L', 'TRPV2', 'TTC19', 'TVP23B', 'TVP23C', 'TVP23C-CDRT4', 'UBB', 'USP32P1', 'USP32P2', 'ZNF18', 'ZNF286A', 'ZNF286B', 'ZNF287', 'ZNF624', 'ZSWIM7']

Predicted Features

Class Amplicon Complexity Score
Linear amplification 10 0.8591408178
Image 1

Class Amplicon Complexity Score
Linear amplification 1 0.7231587782
Image 2

Class Amplicon Complexity Score
Linear amplification 2 0.4976906611
Image 3

Class Amplicon Complexity Score
Linear amplification 3 1.408580715
Image 4

Class Amplicon Complexity Score
Linear amplification 4 3e-10
Image 5

Class Amplicon Complexity Score
Linear amplification 5 0.6502549396
Image 6

Class Amplicon Complexity Score
Linear amplification 6 0.1803589202
Image 7

Class Amplicon Complexity Score
BFB 7 1.045134183
Image 8

Class Amplicon Complexity Score
ecDNA 8 0.6919906976
Image 9

Class Amplicon Complexity Score
BFB 9 1.147233492
Image 10

Prediction

ecDNA: None


Prediction

Shatterseek Prediction: High Confidence

Shatterseek High Confidence Chromosomes: 5

Shatterseek Low Confidence Chromosomes: 4, 11