SNU16_STOMACH


Available Data

  • Vendor Karyotype
  • Amplicon Architect Prediction
  • Circle Hunter Prediction

ID Value
ATCC CRL-5974
DSMZ None
Cellosaurus SNU-16
Cosmic 908446.0

Property Value
% Polyploidy 1.0
Ploidy Classification hypotetraploid
Modal Chromosome Number None
Modal Range Numeric None
Marker Chromosomes Average Field 9.0
Primary or Metastasis Metastasis
Count of SV's 6

Details

ecDNA Present (Y/N/P): Y

HSR Classification: Y

ATCC Karyotype: This is a human cell line with the bimodal chromosome number distributions. Both modal populations were hypotetraploid. Cells with higher ploidies occurred at 1%. Nine marker chromosomes were common to all cells: t(4q21q); der(5)t(2;5) (q11.2;q13); i(5p); del(17) (p11.2); del(10) (q22.1) and four others. Of these, del(17) generally had two copies per cell. Seven or more other marker chromosomes including HSR(11) (p15.1) were found in some cells only. Multiple copies of DMs were present in most cells. Consistently there were three normal X chromosomes per cell. N7 had six copies and N14, five copies per cell. Normal N12 was not found.

DSMZ Karyotype: No data

Heterogeneity Indications and Other Notes: Multiple copies of DMs were present in most cells

Download Breakpoint Edges CSV

Prediction

ecDNA Amplicon Predicted: Y

Predicted Amplicon Classes: ['ecDNA']

Predicted Genes on ecDNA

['APIP', 'ATE1', 'CASC11', 'CASC21', 'CASC8', 'CCAT2', 'CD44', 'COMMD9', 'FGFR2', 'FJX1', 'LDLRAD3', 'LRATD2', 'MYC', 'PAMR1', 'PDHX', 'PLPP4', 'POU5F1B', 'PVT1', 'RPL21', 'SLC1A2', 'SNORD164', 'TMEM75', 'TRIM44', 'WDR11', 'WDR11-AS1']

Predicted Features

Class Amplicon Complexity Score
ecDNA 1 2.288707746
Image 1

Prediction

ecDNA: positive

Genes: RNVU1-32,RNU4-25P;RPS15AP5;RPL19P16,RN7SKP167,RPS15AP5;.;RN7SKP167,RPS15AP5;RPL19P16;BRD9P2;RN7SKP167;RPL19P16,RN7SKP167


Prediction

No data