SNB19_CENTRAL_NERVOUS_SYSTEM


Available Data

  • Vendor Karyotype
  • ecDNA Presence Verification from Literature
  • Amplicon Architect Prediction

ID Value
ATCC CRL-2219
DSMZ ACC-325
Cellosaurus SNB-19
Cosmic None

Property Value
% Polyploidy 15.0
Ploidy Classification hypotriploid
Modal Chromosome Number 63.0
Modal Range Numeric 58-63
Marker Chromosomes Average Field 2.0
Primary or Metastasis Primary
Count of SV's 6

Details

ecDNA Present (Y/N/P): Y

Literature source: https://www.nature.com/articles/nature21356

HSR Classification: N

ATCC Karyotype: No data

DSMZ Karyotype: human hypotriploid karyotype with 15% polyploidy - 63(58-63)<3n>XXY, +1, +7, -8, -10, -12, -13, -14, -15, -16, -18, -21, -22, +2mar, der(1)del(1)(q23)ins(1;4)(p32;q?23q27), del(1)(q13), del(4)(q23q27), del(4)(q28q35), add(8)(q24), add(11)(p15), der(19)add(19)(p13)add(19)(q13) - large submetacentric, der(19) and der(1) markers - matches published karyotype

Heterogeneity Indications and Other Notes: No data

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Prediction

ecDNA Amplicon Predicted: N

Predicted Amplicon Classes: ['Linear amplification']

Predicted Genes on ecDNA

[]

Predicted Features

Class Amplicon Complexity Score
Linear amplification 1 0.3205778703
Image 1

Class Amplicon Complexity Score
Linear amplification 2 0.6178760811
Image 2

Class Amplicon Complexity Score
Linear amplification 3 1e-10
Image 3

Prediction

ecDNA: None


Prediction

No data