SKMEL2_SKIN


Available Data

  • Vendor Karyotype
  • ecDNA Presence Verification from Literature
  • Amplicon Architect Prediction
  • Shatterseek Prediction

ID Value
ATCC HTB-68
DSMZ None
Cellosaurus SK-MEL-2
Cosmic 905955.0

Property Value
% Polyploidy None
Ploidy Classification mix (hypodiploid, hypertetraploid)
Modal Chromosome Number None
Modal Range Numeric 35-103
Marker Chromosomes Average Field None
Primary or Metastasis Metastasis
Count of SV's 0

Details

ecDNA Present (Y/N/P): N

Literature source: https://www.nature.com/articles/nature21356

HSR Classification: N

ATCC Karyotype: (P6) hypodiploid to hypertetraploid with abnormalities including dicentrics, secondary constrictions and large telocentric marker. Note: Cytogenetic information is based on initial seed stock at ATCC. Cytogenetic instability has been reported in the literature for some cell lines.

DSMZ Karyotype: No data

Heterogeneity Indications and Other Notes: No data

Download Breakpoint Edges CSV

Prediction

ecDNA Amplicon Predicted: N

Predicted Amplicon Classes: ['Linear amplification']

Predicted Genes on ecDNA

[]

Predicted Features

Class Amplicon Complexity Score
Linear amplification 1 0.0
Image 1

Class Amplicon Complexity Score
Linear amplification 2 0.3930766842
Image 2

Class Amplicon Complexity Score
Linear amplification 3 1.314853176
Image 3

Prediction

ecDNA: None


Prediction

Shatterseek Prediction: No Chromothripsis Detected

Shatterseek High Confidence Chromosomes: None

Shatterseek Low Confidence Chromosomes: None