SKLU1_LUNG


Available Data

  • Vendor Karyotype
  • Amplicon Architect Prediction
  • Shatterseek Prediction

ID Value
ATCC HTB-57
DSMZ None
Cellosaurus SK-LU-1
Cosmic 909721.0

Property Value
% Polyploidy None
Ploidy Classification hypotetraploid
Modal Chromosome Number None
Modal Range Numeric 81-91
Marker Chromosomes Average Field None
Primary or Metastasis Primary
Count of SV's 10

Details

ecDNA Present (Y/N/P): N

HSR Classification: N

ATCC Karyotype: The stemline chromosome number is hypotetraploid, with the 2S component occurring at 4.4%. Marker chromosomes 1p, t(1q;11q); 11q+; t(13;?); 16q+; t(12q; 18q); M10; t(2q;13q); i(15); and ?t(xp;21q) occurred in all S metaphases, and t(1p;?); t(1p;14q); t(16;?), and t(14;21) occurred in some. In addition, 4 to 9 small markers of unidentifiable origin occurred frequently. Chromosome No. 7 was generally hexasomic, X chromosomes were disomic, and normal No. 15 was absent. No Y chromosome was detected in the QM stained preparation.

DSMZ Karyotype: No data

Heterogeneity Indications and Other Notes: HSRs

Download Breakpoint Edges CSV

Prediction

ecDNA Amplicon Predicted: N

Predicted Amplicon Classes: ['Linear amplification', 'Complex non-cyclic', 'BFB']

Predicted Genes on ecDNA

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Predicted Features

Class Amplicon Complexity Score
Linear amplification 1 0.0
Image 1

Class Amplicon Complexity Score
Linear amplification 2 0.7807567056
Image 2

Class Amplicon Complexity Score
Linear amplification 3 0.5757063999
Image 3

Class Amplicon Complexity Score
Complex non-cyclic 4 1.032853422
Image 4

Class Amplicon Complexity Score
BFB 5 1.119091157
Image 5

Class Amplicon Complexity Score
Complex non-cyclic 6 0.95815095
Image 6

Class Amplicon Complexity Score
Linear amplification 7 0.9546804913
Image 7

Class Amplicon Complexity Score
Linear amplification 8 0.0
Image 8

Prediction

ecDNA: None


Prediction

Shatterseek Prediction: Low Confidence

Shatterseek High Confidence Chromosomes: None

Shatterseek Low Confidence Chromosomes: 4, 5