SKLMS1_SOFT_TISSUE
Available Data
- Vendor Karyotype
- Amplicon Architect Prediction
- Shatterseek Prediction
| Property | Value |
|---|---|
| % Polyploidy | None |
| Ploidy Classification | mix (triploid, hypertriploid) |
| Modal Chromosome Number | None |
| Modal Range Numeric | 69-80 |
| Marker Chromosomes Average Field | 8.0 |
| Primary or Metastasis | Primary |
| Count of SV's | 5 |
Details
ecDNA Present (Y/N/P): N
HSR Classification: N
ATCC Karyotype: The cell line is aneuploid human female, with chromosome counts in the triploid to hypertriploid range. Neither of the X chromosomes are normal, but their q arms are detected in a translocation with chromosome N4. Normal chromosomes N1, N4, N13, and N17 are clearly under-represented, while chromosomes N6, N18, and N20 are consistently over-represented with respect to the copy numbers of other normal chromosomes. Eight marker chromosomes are identified: 5p+, t(1pter--->cen::9q12--->9q33::3p21--->3pter), t(1p;?), der(2)t(1;2)(q21;q24), 12p+, der(6)t(6;?)(q21;?), der(4)t(X;4)(q13;q34), del(16)(p13). The cytogenetic and isozyme phenotype descriptors are in accord with those given by J. Fogh.
DSMZ Karyotype: No data
Heterogeneity Indications and Other Notes: No data
Prediction
ecDNA Amplicon Predicted: N
Predicted Amplicon Classes: ['Linear amplification']
Predicted Genes on ecDNA
Predicted Features
View Feature 1 - SKLMS1_SOFT_TISSUE Linear amplification
| Class | Amplicon | Complexity Score |
|---|---|---|
| Linear amplification | 1 | 2.8e-09 |
Prediction
ecDNA: None
Prediction
Shatterseek Prediction: High Confidence
Shatterseek High Confidence Chromosomes: 3
Shatterseek Low Confidence Chromosomes: 17