SKCO1_LARGE_INTESTINE


Available Data

  • Vendor Karyotype
  • Amplicon Architect Prediction
  • Shatterseek Prediction

ID Value
ATCC HTB-39
DSMZ None
Cellosaurus SK-CO-1
Cosmic 909718.0

Property Value
% Polyploidy None
Ploidy Classification mix (hypertriploid, hypotetraploid)
Modal Chromosome Number None
Modal Range Numeric 70-91
Marker Chromosomes Average Field 8.0
Primary or Metastasis Metastasis
Count of SV's 0

Details

ecDNA Present (Y/N/P): N

HSR Classification: N

ATCC Karyotype: (P7) hypertriploid to hypotetraploid with abnormalities including dicentrics, minutes, rings, secondary constrictions, and 8 large submetacentric markers

DSMZ Karyotype: No data

Heterogeneity Indications and Other Notes: No data

Download Breakpoint Edges CSV

Prediction

ecDNA Amplicon Predicted: N

Predicted Amplicon Classes: ['Linear amplification', 'BFB']

Predicted Genes on ecDNA

[]

Predicted Features

Class Amplicon Complexity Score
Linear amplification 1 0.0448951043
Image 1

Class Amplicon Complexity Score
Linear amplification 2 1.55330243
Image 2

Class Amplicon Complexity Score
BFB 3 1.042328655
Image 3

Class Amplicon Complexity Score
Linear amplification 4 1.008984561
Image 4

Class Amplicon Complexity Score
BFB 5 1.333907775
Image 5

Class Amplicon Complexity Score
Linear amplification 6 8e-10
Image 6

Class Amplicon Complexity Score
BFB 7 0.9698635111
Image 7

Class Amplicon Complexity Score
Linear amplification 8 0.6443084385
Image 8

Prediction

ecDNA: None


Prediction

Shatterseek Prediction: Low Confidence

Shatterseek High Confidence Chromosomes: None

Shatterseek Low Confidence Chromosomes: 3, 4, 7, 9