SF295_CENTRAL_NERVOUS_SYSTEM


Available Data

  • ecDNA Presence Verification from Literature
  • Amplicon Architect Prediction
  • Shatterseek Prediction

ID Value
ATCC None
DSMZ None
Cellosaurus None
Cosmic 905985.0

Details

ecDNA Present (Y/N/P): Y

Literature source: https://www.sciencedirect.com/science/article/pii/S0165460804006387
https://link.springer.com/content/pdf/10.1007/BF00686798.pdf
https://www.nature.com/articles/nature21356

HSR Classification: No data

ATCC Karyotype: No data

DSMZ Karyotype: No data

Heterogeneity Indications and Other Notes: No data

Download Breakpoint Edges CSV

Prediction

ecDNA Amplicon Predicted: Y

Predicted Amplicon Classes: ['ecDNA', 'Linear amplification']

Predicted Genes on ecDNA

['CCND1', 'FGF19', 'FGF3', 'FGF4', 'IGHMBP2', 'LTO1', 'MRGPRD', 'MRGPRF', 'MRGPRF-AS1', 'MRPL21', 'MYEOV', 'SMIM38', 'TPCN2']

Predicted Features

Class Amplicon Complexity Score
ecDNA 1 0.5911908215
Image 1

Class Amplicon Complexity Score
Linear amplification 2 0.6869612817
Image 2

Prediction

ecDNA: None


Prediction

Shatterseek Prediction: Low Confidence

Shatterseek High Confidence Chromosomes: None

Shatterseek Low Confidence Chromosomes: 2, 3, 11