Available Data

ecDNA Presence Verification from Literature
Amplicon Architect Prediction

ID	Value
ATCC	None
DSMZ	None
Cellosaurus	None
Cosmic	905986.0

Details

ecDNA Present (Y/N/P): N

Literature source: https://www.nature.com/articles/nature21356

HSR Classification: No data

ATCC Karyotype: No data

DSMZ Karyotype: No data

Heterogeneity Indications and Other Notes: No data

Download Breakpoint Edges CSV

Prediction

ecDNA Amplicon Predicted: Y

Predicted Amplicon Classes: ['Linear amplification', 'ecDNA']

Predicted Genes on ecDNA

['ABCG4', 'ACAT1', 'ALKBH8', 'ARCN1', 'ARHGEF12', 'ATM', 'BCL9L', 'C11orf65', 'C11orf87', 'C1QTNF5', 'C2CD2L', 'CBL', 'CCDC153', 'CCDC84', 'CRTAM', 'CUL5', 'CWF19L2', 'CXCR5', 'DDX10', 'DDX6', 'DPAGT1', 'ELMOD1', 'EXPH5', 'FOXR1', 'GUCY1A2', 'H2AX', 'HINFP', 'HMBS', 'HYOU1', 'IFT46', 'JHY', 'KMT2A', 'MCAM', 'MFRP', 'MSANTD4', 'NECTIN1', 'NLRX1', 'NPAT', 'OAF', 'PDZD3', 'PHLDB1', 'POGLUT3', 'POU2F3', 'RAB39A', 'RNF26', 'RPL23AP64', 'RPS25', 'SLC35F2', 'SLC37A4', 'SLN', 'SNORD150', 'THY1', 'TLCD5', 'TMEM25', 'TRAPPC4', 'TREH', 'TTC36', 'UBASH3B', 'UPK2', 'USP2', 'USP2-AS1', 'VPS11']

Predicted Features

View Feature 1 - SF268_CENTRAL_NERVOUS_SYSTEM Linear amplification

Class	Amplicon	Complexity Score
Linear amplification	1	0.5035594043

View Feature 2 - SF268_CENTRAL_NERVOUS_SYSTEM ecDNA

Class	Amplicon	Complexity Score
ecDNA	2	0.9491129069

Prediction

ecDNA: None

Prediction

No data