SCC4_UPPER_AERODIGESTIVE_TRACT


Available Data

  • Vendor Karyotype
  • Amplicon Architect Prediction
  • Shatterseek Prediction

ID Value
ATCC CRL-1624
DSMZ ACC-618
Cellosaurus SCC-4
Cosmic 910904.0

Property Value
% Polyploidy None
Ploidy Classification mix (heteroploid, pentaploid, decaploid)
Modal Chromosome Number None
Modal Range Numeric 100-266
Marker Chromosomes Average Field None
Primary or Metastasis Primary
Count of SV's 5

Details

ecDNA Present (Y/N/P): N

HSR Classification: N

ATCC Karyotype: No data

DSMZ Karyotype: human highly rearranged flat-moded heteroploid karyotype with pentaploid and decaploid peaks; 100-117/202-266<5N/10N>XXYY/XXXXYYYY, add(Y)(q12), add(2)(q23), add(3)(q28), del(3)(p11), add(4)(p15), ins(4;?)(q32;??), incomplete

Heterogeneity Indications and Other Notes: No data

Download Breakpoint Edges CSV

Prediction

ecDNA Amplicon Predicted: N

Predicted Amplicon Classes: ['Linear amplification', 'Complex non-cyclic', 'BFB']

Predicted Genes on ecDNA

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Predicted Features

Class Amplicon Complexity Score
Linear amplification 1 1.903600087
Image 1

Class Amplicon Complexity Score
Complex non-cyclic 2 1.618337444
Image 2

Class Amplicon Complexity Score
Linear amplification 3 0.4142377401
Image 3

Class Amplicon Complexity Score
BFB 4 1.24161864
Image 4

Class Amplicon Complexity Score
Complex non-cyclic 5 0.4393870535
Image 5

Class Amplicon Complexity Score
Linear amplification 6 0.0
Image 6

Class Amplicon Complexity Score
Linear amplification 9 3.8e-09
Image 7

Prediction

ecDNA: None


Prediction

Shatterseek Prediction: High Confidence

Shatterseek High Confidence Chromosomes: 17

Shatterseek Low Confidence Chromosomes: 4