SCC25_UPPER_AERODIGESTIVE_TRACT


Available Data

  • Vendor Karyotype
  • Amplicon Architect Prediction
  • Circle Hunter Prediction
  • Shatterseek Prediction

ID Value
ATCC CRL-1628
DSMZ ACC-617
Cellosaurus SCC-25
Cosmic 910701.0

Property Value
% Polyploidy 4.0
Ploidy Classification hypertriploid
Modal Chromosome Number None
Modal Range Numeric 72-82
Marker Chromosomes Average Field None
Primary or Metastasis Primary
Count of SV's 12

Details

ecDNA Present (Y/N/P): N

HSR Classification: N

ATCC Karyotype: No data

DSMZ Karyotype: human highly rearranged hypertriploid karyotype with 4% polyploidy; 72-82<3n>XX, -Y, +4, -7, +9, +9, -13, -14, +15, -18, -19, -21, +10, -12 mar; add(1)(p31)x2, add(3)(?p11), add(4)(q11), i(5p), i(5q), der(8)t(1;8)(q25;p11)x1-2, del(9)(p11), i(9q), add(11)(q25), i(13q), add(14)(p11), add(15)(p11)x3-4, add(21)(q22)

Heterogeneity Indications and Other Notes: No data

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Prediction

ecDNA Amplicon Predicted: N

Predicted Amplicon Classes: ['Linear amplification', 'BFB']

Predicted Genes on ecDNA

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Predicted Features

Class Amplicon Complexity Score
Linear amplification 1 1.128230894
Image 1

Class Amplicon Complexity Score
Linear amplification 2 0.0
Image 2

Class Amplicon Complexity Score
BFB 3 1.615804524
Image 3

Class Amplicon Complexity Score
Linear amplification 4 0.4211603725
Image 4

Class Amplicon Complexity Score
Linear amplification 5 0.6913581203
Image 5

Prediction

ecDNA: negative


Prediction

Shatterseek Prediction: No Chromothripsis Detected

Shatterseek High Confidence Chromosomes: None

Shatterseek Low Confidence Chromosomes: None