SCABER_URINARY_TRACT


Available Data

  • Vendor Karyotype
  • Amplicon Architect Prediction
  • Circle Hunter Prediction

ID Value
ATCC HTB-3
DSMZ None
Cellosaurus SCaBER
Cosmic None

Property Value
% Polyploidy None
Ploidy Classification hypotriploid
Modal Chromosome Number None
Modal Range Numeric 58-68
Marker Chromosomes Average Field 11.0
Primary or Metastasis Primary
Count of SV's 10

Details

ecDNA Present (Y/N/P): N

HSR Classification: N

ATCC Karyotype: 2n = 46. The stemline chromosome number is hypotriploid with the 2S component occurring at 9.2%., Eleven markers [t(1;?) del (1)(p13), t(3;?), i(4q), t(8;?), t(9;?), M6, t(1;11), t(21;22), M13, and t(20;?)] and 1 to 3 small chromosome fragments were common to most S metaphases., At least one Y chromosome was always detectable. Number 3 was nullisomic. Neither homogenously staining regions (HSR) nor double minutes (DM) were seen.

DSMZ Karyotype: No data

Heterogeneity Indications and Other Notes: 1-3 small chromosome fragments seen in most cells

Download Breakpoint Edges CSV

Prediction

ecDNA Amplicon Predicted: Y

Predicted Amplicon Classes: ['Complex non-cyclic', 'ecDNA']

Predicted Genes on ecDNA

['AKNAD1', 'AMIGO1', 'AMPD2', 'ATXN7L2', 'C1orf194', 'CELSR2', 'CLCC1', 'CYB561D1', 'FAM102B', 'FNDC7', 'GNAI3', 'GNAT2', 'GPR61', 'GPSM2', 'HENMT1', 'KIAA1324', 'MYBPHL', 'NBPF4', 'NBPF6', 'NTNG1', 'PRMT6', 'PRPF38B', 'PSMA5', 'PSRC1', 'SARS1', 'SCARNA2', 'SLC25A24', 'SORT1', 'SPATA42', 'STXBP3', 'SYPL2', 'TAF13', 'TMEM167B', 'VAV3', 'VAV3-AS1', 'WDR47']

Predicted Features

Class Amplicon Complexity Score
Complex non-cyclic 1 0.4589958801
Image 1

Class Amplicon Complexity Score
ecDNA 2 0.619443659
Image 2

Class Amplicon Complexity Score
Complex non-cyclic 3 1.587898477
Image 3

Class Amplicon Complexity Score
Complex non-cyclic 4 1.402967305
Image 4

Class Amplicon Complexity Score
Complex non-cyclic 5 0.7208520083
Image 5

Class Amplicon Complexity Score
Complex non-cyclic 6 1.123749171
Image 6

Prediction

ecDNA: negative


Prediction

No data