SAOS2_BONE


Available Data

  • Vendor Karyotype
  • ecDNA Presence Verification from Literature
  • Amplicon Architect Prediction

ID Value
ATCC CRL-7939
DSMZ ACC-243
Cellosaurus SaOS-2
Cosmic 909707.0

Property Value
% Polyploidy 16.0
Ploidy Classification hyperdiploid
Modal Chromosome Number 56.0
Modal Range Numeric 52-58
Marker Chromosomes Average Field 15.0
Primary or Metastasis Primary
Count of SV's 11

Details

ecDNA Present (Y/N/P): Y

Literature source: https://www.sciencedirect.com/science/article/pii/0026049591900817

HSR Classification: N

ATCC Karyotype: No data

DSMZ Karyotype: human highly rearranged hyperdiploid karyotype with 16% polyploidy - 56(52-58)<2n>X, -X, -2, -2, +3, -6, -8, +10, -12, +14, +18, -19, +20, -21, -21, -22, +15mar, add(1)(p22), add(3)(q27)x2, add(4)(p15), add(6)(p21), add(7)(p22), add(8)(q24), add(9)(q35), add(11)(p15), add(12)(p13), add(13)(q14), add(14)(p12)x2 - 13q14 breakpoint is associated with osteosarcomas - resembles published karyotype

Heterogeneity Indications and Other Notes: No data

Download Breakpoint Edges CSV

Prediction

ecDNA Amplicon Predicted: N

Predicted Amplicon Classes: ['Linear amplification']

Predicted Genes on ecDNA

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Predicted Features

Class Amplicon Complexity Score
Linear amplification 1 0.2803334852
Image 1

Class Amplicon Complexity Score
Linear amplification 2 0.6894225929
Image 2

Class Amplicon Complexity Score
Linear amplification 5 0.987526813
Image 3

Class Amplicon Complexity Score
Linear amplification 6 0.5068999748
Image 4

Prediction

ecDNA: None


Prediction

No data