RT112_URINARY_TRACT


Available Data

  • Vendor Karyotype
  • Amplicon Architect Prediction
  • Shatterseek Prediction

ID Value
ATCC None
DSMZ ACC-418
Cellosaurus None
Cosmic 909704.0

Property Value
% Polyploidy 4.0
Ploidy Classification hyperdiploid
Modal Chromosome Number 47.0
Modal Range Numeric 44-47
Marker Chromosomes Average Field 1.0
Primary or Metastasis Primary
Count of SV's 14

Details

ecDNA Present (Y/N/P): N

HSR Classification: N

ATCC Karyotype: No data

DSMZ Karyotype: human hyperdiploid karyotype with 4% polyploidy - 47(44-47)<2n>XX/XXX, +X, +10, +11, +14, -17, +mar, add(2)(q3?2), del(3)(p14p24.1), i(4p), add(6)(q2?), i(8q), del(9)(p21p22), add(10)(p12), der(11)t(3;11)(q11-13;p15), add(17)(p1?1), add(18)(q11-22) - sideline with: idem, del(9)(p11), del(11)(q23), add(12)(q24.32), del(13)(q11q14), add(21)(p11) - resembles published karyotypes

Heterogeneity Indications and Other Notes: No data

Download Breakpoint Edges CSV

Prediction

ecDNA Amplicon Predicted: Y

Predicted Amplicon Classes: ['ecDNA', 'BFB']

Predicted Genes on ecDNA

['FGFR3', 'TACC3']

Predicted Features

Class Amplicon Complexity Score
ecDNA 1 0.6912229508
Image 1

Class Amplicon Complexity Score
BFB 2 0.8275786855
Image 2

Class Amplicon Complexity Score
BFB 3 1.494061738
Image 3

Prediction

ecDNA: None


Prediction

Shatterseek Prediction: Low Confidence

Shatterseek High Confidence Chromosomes: None

Shatterseek Low Confidence Chromosomes: 4