RPMI7951_SKIN


Available Data

  • Vendor Karyotype
  • Amplicon Architect Prediction
  • Shatterseek Prediction

ID Value
ATCC HTB-66
DSMZ ACC-66
Cellosaurus RPMI-7951
Cosmic 910903.0

Property Value
% Polyploidy 22.0
Ploidy Classification hyperdiploid
Modal Chromosome Number 54.0
Modal Range Numeric 50-60
Marker Chromosomes Average Field 3.0
Primary or Metastasis Metastasis
Count of SV's 3

Details

ecDNA Present (Y/N/P): N

HSR Classification: Y

ATCC Karyotype: modal number= 49; range = 47 to 66.This is a hyperdiploid human cell line with the modal chromosome number of 49, occurring in 24% of cells. Polyploid cells occurred at 22%, which is high. Seven marker chromosomes were common to most cells, including t(10p14q); t(15q17p), t(Xp8p), del(17) (p13.1) and three others. Five others occurred only in some cells. Normal X chromosomes were absent. N14, N17 and N22 were mostly single-copied and N2 had three copies. Fluorescence examination did not show the presence of any Y-like chromosome.

DSMZ Karyotype: human flat-moded hyperdiploid karyotype with 22% polyploidy - 54(50-60)<2n>X, -X, +1, +2, +6, +7, +8, +20, +20, +3mar, der(8)t(7;8)(p11;p12), der(9)t(9;11)(p21;q11), add(18)(q23;HSR) - shares t(9;11) with IPC-298 defining a new recurrent translocation in malignant melanoma

Heterogeneity Indications and Other Notes: shares t(9;11) with IPC-298 defining a new recurrent translocation in malignant melanoma

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Prediction

ecDNA Amplicon Predicted: N

Predicted Amplicon Classes: ['Linear amplification']

Predicted Genes on ecDNA

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Predicted Features

Class Amplicon Complexity Score
Linear amplification 1 1.314629672
Image 1

Prediction

ecDNA: None


Prediction

Shatterseek Prediction: Low Confidence

Shatterseek High Confidence Chromosomes: None

Shatterseek Low Confidence Chromosomes: 1