Available Data

Amplicon Architect Prediction

ID	Value
ATCC	None
DSMZ	None
Cellosaurus	None
Cosmic	1240209.0

Details

ecDNA Present (Y/N/P): No data

HSR Classification: No data

ATCC Karyotype: No data

DSMZ Karyotype: No data

Heterogeneity Indications and Other Notes: No data

Download Breakpoint Edges CSV

Prediction

ecDNA Amplicon Predicted: Y

Predicted Amplicon Classes: ['Complex non-cyclic', 'ecDNA']

Predicted Genes on ecDNA

['ARPC4', 'ARPC4-TTLL3', 'ATG7', 'ATP2B2', 'ATP2B2-IT2', 'BRK1', 'BRPF1', 'C3orf20', 'CAMK1', 'CAND2', 'CAV3', 'CCDC174', 'CHCHD4', 'CIDEC', 'CIDECP1', 'CPNE9', 'CRELD1', 'EMC3', 'EMC3-AS1', 'FANCD2', 'FANCD2OS', 'FBLN2', 'FGD5', 'FGD5P1', 'GHRL', 'GHRLOS', 'GRIP2', 'GRM7', 'GRM7-AS1', 'GRM7-AS2', 'GRM7-AS3', 'HDAC11', 'HDAC11-AS1', 'HRH1', 'IL17RC', 'IL17RE', 'IQSEC1', 'IRAK2', 'JAGN1', 'LHFPL4', 'LMCD1', 'LMCD1-AS1', 'LSM3', 'MKRN2', 'MKRN2OS', 'MTMR14', 'NUP210', 'OGG1', 'OXTR', 'PPARG', 'PRRT3', 'PRRT3-AS1', 'RAD18', 'RAF1', 'RPL32', 'RPUSD3', 'SEC13', 'SETD5', 'SLC6A1', 'SLC6A1-AS1', 'SLC6A11', 'SLC6A6', 'SNORA7A', 'SNORA93', 'SRGAP3', 'SRGAP3-AS2', 'SRGAP3-AS3', 'SRGAP3-AS4', 'SSUH2', 'SYN2', 'TADA3', 'TAMM41', 'TATDN2', 'THUMPD3', 'THUMPD3-AS1', 'TIMP4', 'TMEM40', 'TMEM43', 'TPRXL', 'TSEN2', 'TTLL3', 'VGLL4', 'VHL', 'WNT7A', 'XPC', 'ADO', 'ANK3', 'ARID5B', 'CABCOCO1', 'CCDC172', 'CCDC6', 'CDK1', 'EGR2', 'GFRA1', 'GTSF1L', 'IFT52', 'JMJD1C', 'JMJD1C-AS1', 'L3MBTL1', 'MRLN', 'MYBL2', 'NRBF2', 'PTPRT', 'REEP3', 'RHOBTB1', 'RTKN2', 'SGK2', 'SLC16A9', 'SNORD158', 'SRSF6', 'TMEM26', 'TMEM26-AS1', 'TOX2', 'ZNF365']

Predicted Features

View Feature 1 - RERFGC1B_STOMACH Complex non-cyclic

Class	Amplicon	Complexity Score
Complex non-cyclic	1	1.762302212

View Feature 2 - RERFGC1B_STOMACH ecDNA

Class	Amplicon	Complexity Score
ecDNA	2	0.7736049156

View Feature 3 - RERFGC1B_STOMACH ecDNA

Class	Amplicon	Complexity Score
ecDNA	4	1.511603715

View Feature 4 - RERFGC1B_STOMACH ecDNA

Class	Amplicon	Complexity Score
ecDNA	4	1.080269727

Prediction

ecDNA: None

Prediction

No data