QGP1_PANCREAS


Available Data

  • Amplicon Architect Prediction
  • Shatterseek Prediction

ID Value
ATCC None
DSMZ None
Cellosaurus None
Cosmic 1298534.0

Details

ecDNA Present (Y/N/P): No data

HSR Classification: No data

ATCC Karyotype: No data

DSMZ Karyotype: No data

Heterogeneity Indications and Other Notes: No data

Download Breakpoint Edges CSV

Prediction

ecDNA Amplicon Predicted: Y

Predicted Amplicon Classes: ['ecDNA', 'Linear amplification', 'Complex non-cyclic', 'BFB']

Predicted Genes on ecDNA

['GNS', 'GRIP1', 'HELB', 'HMGA2', 'HMGA2-AS1', 'IRAK3', 'LEMD3', 'LLPH', 'LLPH-DT', 'MSRB3', 'RASSF3', 'RPSAP52', 'TBC1D30', 'TMBIM4', 'WIF1', 'DYRK2']

Predicted Features

Class Amplicon Complexity Score
ecDNA 1 0.5809376544
Image 1

Class Amplicon Complexity Score
Linear amplification 2 8e-10
Image 2

Class Amplicon Complexity Score
Complex non-cyclic 3 0.8979216334
Image 3

Class Amplicon Complexity Score
ecDNA 4 0.6747290661
Image 4

Class Amplicon Complexity Score
ecDNA 4 0.3241327679
Image 5

Class Amplicon Complexity Score
BFB 4 1.661936728
Image 6

Prediction

ecDNA: None


Prediction

Shatterseek Prediction: Low Confidence

Shatterseek High Confidence Chromosomes: None

Shatterseek Low Confidence Chromosomes: 1