PANC1_PANCREAS


Available Data

  • Vendor Karyotype
  • Amplicon Architect Prediction
  • Circle Hunter Prediction
  • Shatterseek Prediction

ID Value
ATCC CRL-1469
DSMZ ACC-783
Cellosaurus PANC-1
Cosmic None

Property Value
% Polyploidy 8.5
Ploidy Classification hypotriploid
Modal Chromosome Number 61.0
Modal Range Numeric 58-68
Marker Chromosomes Average Field None
Primary or Metastasis Primary
Count of SV's 5

Details

ecDNA Present (Y/N/P): N

HSR Classification: N

ATCC Karyotype: Chromosome studies indicate a modal number of 63 with 3 distinct marker chromosomes and a small ring chromosome. This is a hypertriploid human cell line. The modal chromosome number was 61, occurring in 32% of cells., However, cells with 63 chromosomes also occurred at a high frequency (22%). The rate of cells with higher ploidies was 8.5%.

DSMZ Karyotype: No data

Heterogeneity Indications and Other Notes: No data

Download Breakpoint Edges CSV

Prediction

ecDNA Amplicon Predicted: Y

Predicted Amplicon Classes: ['ecDNA', 'BFB', 'Linear amplification']

Predicted Genes on ecDNA

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Predicted Features

Class Amplicon Complexity Score
ecDNA 1 0.5887023847
Image 1

Class Amplicon Complexity Score
BFB 2 1.705239474
Image 2

Class Amplicon Complexity Score
Linear amplification 3 0.0
Image 3

Prediction

ecDNA: negative


Prediction

Shatterseek Prediction: High Confidence

Shatterseek High Confidence Chromosomes: 9

Shatterseek Low Confidence Chromosomes: 11