Available Data

ecDNA Presence Verification from Literature
Amplicon Architect Prediction
Circle Hunter Prediction

ID	Value
ATCC	None
DSMZ	None
Cellosaurus	None
Cosmic	905991.0

Details

ecDNA Present (Y/N/P): N

Literature source: https://www.nature.com/articles/nature21356

HSR Classification: No data

ATCC Karyotype: No data

DSMZ Karyotype: No data

Heterogeneity Indications and Other Notes: No data

Download Breakpoint Edges CSV

Prediction

ecDNA Amplicon Predicted: Y

Predicted Amplicon Classes: ['ecDNA', 'Linear amplification', 'BFB']

Predicted Genes on ecDNA

['AGL', 'CDC14A', 'DBT', 'DPH5', 'EXTL2', 'FRRS1', 'GPR88', 'LRRC39', 'MFSD14A', 'PALMD', 'PLPPR4', 'RTCA', 'RTCA-AS1', 'S1PR1', 'SASS6', 'SLC30A7', 'SLC35A3', 'TRMT13', 'VCAM1', 'NGF', 'NGF-AS1', 'ANKH', 'CTD-2350J17.1', 'FBXL7', 'OTULIN', 'OTULINL', 'SNORD141A', 'SNORD141B', 'SNORD170', 'TRIO']

Predicted Features

View Feature 1 - OVCAR8_OVARY ecDNA

Class	Amplicon	Complexity Score
ecDNA	1	0.6605486675

View Feature 2 - OVCAR8_OVARY ecDNA

Class	Amplicon	Complexity Score
ecDNA	2	0.6278598767

View Feature 3 - OVCAR8_OVARY ecDNA

Class	Amplicon	Complexity Score
ecDNA	3	0.6913970751

View Feature 4 - OVCAR8_OVARY Linear amplification

Class	Amplicon	Complexity Score
Linear amplification	5	0.9837057002

View Feature 5 - OVCAR8_OVARY ecDNA

Class	Amplicon	Complexity Score
ecDNA	6	0.6869563085

View Feature 6 - OVCAR8_OVARY Linear amplification

Class	Amplicon	Complexity Score
Linear amplification	7	0.6460308504

View Feature 7 - OVCAR8_OVARY ecDNA

Class	Amplicon	Complexity Score
ecDNA	8	0.6931481822

View Feature 8 - OVCAR8_OVARY BFB

Class	Amplicon	Complexity Score
BFB	9	0.9686167724

Prediction

ecDNA: positive

Genes: .

Prediction

No data