OS25HAL_HIGH_GRADE_OSTEOSARCOMA


Available Data

  • Amplicon Architect Prediction

Details

ecDNA Present (Y/N/P): No data

HSR Classification: No data

ATCC Karyotype: No data

DSMZ Karyotype: No data

Heterogeneity Indications and Other Notes: No data

Download Breakpoint Edges CSV

Prediction

ecDNA Amplicon Predicted: Y

Predicted Amplicon Classes: ['ecDNA', 'Linear amplification']

Predicted Genes on ecDNA

['BRDTP1', 'DIAPH2', 'PLCL1', 'RPA4', 'GLRB', 'PDGFC', 'PPIL4', 'SUMO4', 'TAB2', 'TAB2-AS1', 'UST', 'UST-AS1', 'ZC3H12D', 'AARS2', 'ANXA13', 'C6orf223', 'CAPN11', 'CD274', 'CDC5L', 'FAM91A1', 'FBXO32', 'FER1L6', 'FER1L6-AS1', 'FER1L6-AS2', 'FSTL5', 'HSP90AB1', 'INSL4', 'INSL6', 'KLHL38', 'MRPL14', 'MTSS1', 'MYMX', 'NDUFB9', 'NFKBIE', 'PDCD1LG2', 'PLGRKT', 'RLN1', 'RLN2', 'RNF139', 'RNF139-AS1', 'SLC29A1', 'SLC35B2', 'SPATS1', 'SQLE', 'SUPT3H', 'TATDN1', 'TCTE1', 'TMEM151B', 'TMEM63B', 'TMEM65', 'TRMT12', 'TRPS1', 'VEGFA', 'WASHC5', 'ZNF572', 'C8orf89', 'CASC11', 'CASC19', 'CASC21', 'CASC8', 'CCAT1', 'CCAT2', 'EYA1', 'KCNB2', 'MSC', 'MSC-AS1', 'MYC', 'PCAT1', 'PCAT2', 'POU5F1B', 'PRNCR1', 'PVT1', 'RDH10', 'RDH10-AS1', 'RPL7', 'SBSPON', 'STAU2', 'STAU2-AS1', 'TERF1', 'TMEM75', 'TRPA1', 'AGAP2', 'AGAP2-AS1', 'AMDHD1', 'ARHGAP9', 'ARHGEF25', 'AVIL', 'AVPR1A', 'B4GALNT1', 'CCDC38', 'CDK17', 'CDK4', 'CEP83', 'CEP83-DT', 'CFAP54', 'CS', 'CTDSP2', 'CYP27B1', 'DCTN2', 'DDIT3', 'DTX3', 'EEF1AKMT3', 'ELK3', 'FGD6', 'GLI1', 'HAL', 'KIF5A', 'KRT19P2', 'LTA4H', 'MARCHF9', 'MARS1', 'MBD6', 'METAP2', 'METTL1', 'NDUFA12', 'NR2C1', 'NTN4', 'OS9', 'PGAM1P5', 'PIP4K2C', 'PLXNC1', 'SLC26A10', 'SNRPF', 'TMCC3', 'TSFM', 'TSPAN31', 'USP44', 'VEZT', 'VAMP7']

Predicted Features

Class Amplicon Complexity Score
Linear amplification 10 0.7853689296
Image 1

Class Amplicon Complexity Score
ecDNA 1 0.7509985432
Image 2

Class Amplicon Complexity Score
ecDNA 1 0.4131047106
Image 3

Class Amplicon Complexity Score
ecDNA 1 0.9220022588
Image 4

Class Amplicon Complexity Score
ecDNA 1 0.6186445962
Image 5

Class Amplicon Complexity Score
ecDNA 1 0.3106011485
Image 6

Class Amplicon Complexity Score
ecDNA 3 1.141540857
Image 7

Class Amplicon Complexity Score
Linear amplification 4 0.7160760117
Image 8

Class Amplicon Complexity Score
Linear amplification 5 0.7330118647
Image 9

Class Amplicon Complexity Score
Linear amplification 6 0.0599125653
Image 10

Class Amplicon Complexity Score
Linear amplification 7 0.8443370179
Image 11

Class Amplicon Complexity Score
Linear amplification 8 0.0517338009
Image 12

Class Amplicon Complexity Score
ecDNA 9 0.9361572084
Image 13

Prediction

ecDNA: None


Prediction

No data