OHSN_HIGH_GRADE_OSTEOSARCOMA


Available Data

  • Amplicon Architect Prediction

Details

ecDNA Present (Y/N/P): No data

HSR Classification: No data

ATCC Karyotype: No data

DSMZ Karyotype: No data

Heterogeneity Indications and Other Notes: No data

Download Breakpoint Edges CSV

Prediction

ecDNA Amplicon Predicted: Y

Predicted Amplicon Classes: ['Linear amplification', 'Complex non-cyclic', 'ecDNA']

Predicted Genes on ecDNA

['ABRA', 'ANGPT1', 'EIF3E', 'EMC2', 'OXR1', 'RSPO2', 'TMEM74', 'C15orf32', 'C8orf87', 'DNM1P46', 'FAM174B', 'GTDC1', 'HSP90B2P', 'IGF1R', 'IRAIN', 'LRRC28', 'LUNAR1', 'LYSMD4', 'MEF2A', 'PGPEP1L', 'SLCO3A1', 'ST8SIA2', 'SYNM', 'TEX41', 'TTC23', 'ZEB2', 'ZEB2-AS1', 'AARD', 'EIF3H', 'EXT1', 'MED30', 'RAD21', 'RAD21-AS1', 'SLC30A8', 'UTP23', 'ABCA10', 'ABCA6', 'ABCA8', 'ABCA9', 'ABCA9-AS1', 'AMZ2', 'ARHGAP27P2', 'ARSG', 'BPTF', 'C17orf58', 'CSNK1A1L', 'FAM20A', 'KPNA2', 'NOL11', 'PITPNC1', 'PRKAR1A', 'PSMD12', 'SLC16A6', 'SNORA38B', 'WIPI1']

Predicted Features

Class Amplicon Complexity Score
Linear amplification 10 0.9812291044
Image 1

Class Amplicon Complexity Score
Linear amplification 11 0.6452645154
Image 2

Class Amplicon Complexity Score
Linear amplification 12 1.002220127
Image 3

Class Amplicon Complexity Score
Complex non-cyclic 13 1.504823454
Image 4

Class Amplicon Complexity Score
Linear amplification 1 0.7011454463
Image 5

Class Amplicon Complexity Score
ecDNA 2 1.564577471
Image 6

Class Amplicon Complexity Score
ecDNA 2 0.6848354126
Image 7

Class Amplicon Complexity Score
ecDNA 2 0.6016405622
Image 8

Class Amplicon Complexity Score
Linear amplification 3 0.491201362
Image 9

Class Amplicon Complexity Score
Linear amplification 4 0.6034267934
Image 10

Class Amplicon Complexity Score
Linear amplification 5 0.6766395332
Image 11

Class Amplicon Complexity Score
Linear amplification 6 0.7542972296
Image 12

Class Amplicon Complexity Score
Complex non-cyclic 7 1.268725801
Image 13

Class Amplicon Complexity Score
ecDNA 8 0.6215030597
Image 14

Class Amplicon Complexity Score
Linear amplification 9 0.7024444205
Image 15

Prediction

ecDNA: None


Prediction

No data