OE33_OESOPHAGUS


Available Data

  • Vendor Karyotype
  • Amplicon Architect Prediction

ID Value
ATCC None
DSMZ ACC-706
Cellosaurus None
Cosmic 910549.0

Property Value
% Polyploidy None
Ploidy Classification hypertetraploid
Modal Chromosome Number None
Modal Range Numeric 92-100
Marker Chromosomes Average Field 6.0
Primary or Metastasis Primary
Count of SV's 6

Details

ecDNA Present (Y/N/P): N

HSR Classification: N

ATCC Karyotype: No data

DSMZ Karyotype: human flat-moded hypertetraploid karyotype; 92-100<4n>XX, -X, -X, +1, -4, +5, +6, +7, +7, +7, +7, +8, +10, +10, -13, -13, -13, +16, +16, +16, -17, -18, -18, -19, +20, +20, +20, +20, -21, -22, -22, +6mar; add(1)(p13)x2, i(3)(q10)x1-2, del(5)(p14.2), add(6)(q22), add(7)(q34)x3, der(11)add(11)(q23)i(11)(q10), add(14)(p11)

Heterogeneity Indications and Other Notes: No data

Download Breakpoint Edges CSV

Prediction

ecDNA Amplicon Predicted: Y

Predicted Amplicon Classes: ['ecDNA', 'BFB']

Predicted Genes on ecDNA

['ANKRD7', 'ASZ1', 'CAPZA2', 'CAV1', 'CAV2', 'CFTR', 'CFTR-AS1', 'CTTNBP2', 'FOXP2', 'KCND2', 'LSM8', 'MDFIC', 'MET', 'PPP1R3A', 'SNORA25B', 'ST7', 'ST7-AS1', 'ST7-AS2', 'ST7-OT3', 'ST7-OT4', 'TES', 'TFEC', 'WNT2', 'CASC8', 'KRT33A', 'KRTAP16-1', 'KRTAP17-1', 'KRTAP29-1', 'KRTAP9-2', 'KRTAP9-3', 'KRTAP9-4', 'KRTAP9-6', 'KRTAP9-8', 'KRTAP9-9', 'ABHD15', 'ANKRD13B', 'CORO6', 'CRYBA1', 'GIT1', 'NUFIP2', 'SSH2', 'TAOK1', 'TP53I13']

Predicted Features

Class Amplicon Complexity Score
ecDNA 1 0.5682665739
Image 1

Class Amplicon Complexity Score
ecDNA 2 0.4693582899
Image 2

Class Amplicon Complexity Score
ecDNA 3 0.6672031415
Image 3

Class Amplicon Complexity Score
BFB 3 1.398605259
Image 4

Class Amplicon Complexity Score
ecDNA 4 0.6555285689
Image 5

Prediction

ecDNA: None


Prediction

No data