OE19_OESOPHAGUS


Available Data

  • Vendor Karyotype
  • Amplicon Architect Prediction
  • Circle Hunter Prediction

ID Value
ATCC None
DSMZ ACC-700
Cellosaurus None
Cosmic 910079.0

Property Value
% Polyploidy 4.0
Ploidy Classification hypotriploid
Modal Chromosome Number None
Modal Range Numeric 58-62
Marker Chromosomes Average Field 6.0
Primary or Metastasis Primary
Count of SV's 22

Details

ecDNA Present (Y/N/P): No data

HSR Classification: No data

ATCC Karyotype: No data

DSMZ Karyotype: human flat-moded hypotriploid karyotype with 4% polyploidy; 58-62<3n>XX, -Y, +1, -4, -5, +8, -10, -14, -14, -15, -15, -17, -18, -18, -21, -21, -22, -22, +6mar; del(X)(p11)ins(X;?)(q11?), add(1)(p11), del(2)(q12), add(3)(p21), add(4)(q11), del(p14), der(4)t(4;4)(p11;q24), del(5)(q11q21), der(6)add(6)(p11)add(6)(q25), add(6)(q11), i(6)(p10), del(7)(q12), add(9(p21), add(10)(p11), del(10)(p12), i(11)(p10), add(12)(p11), i(12)(p10), der(12;13)(p10;q10), add(13)(q32), inv(15)(p11q21), der(16)t(1;16)(q24;p13), add(18)(q23)

Heterogeneity Indications and Other Notes: No data

Download Breakpoint Edges CSV

Prediction

ecDNA Amplicon Predicted: Y

Predicted Amplicon Classes: ['BFB', 'ecDNA']

Predicted Genes on ecDNA

['ARF3', 'CCDC65', 'CPNE8', 'DDN', 'DDN-AS1', 'DDX23', 'FKBP11', 'KMT2D', 'PRKAG1', 'RND1', 'WNT1', 'WNT10B', 'EIF1', 'ERBB2', 'FKBP10', 'GAST', 'GRB7', 'HAP1', 'IKZF3', 'JUP', 'KRT16', 'KRT17', 'KRT42P', 'MIEN1', 'MYO18A', 'NT5C3B', 'P3H4', 'PGAP3', 'PHF12', 'PIPOX', 'SEZ6', 'TIAF1']

Predicted Features

Class Amplicon Complexity Score
BFB 1 0.8972216382
Image 1

Class Amplicon Complexity Score
ecDNA 2 0.5221223468
Image 2

Class Amplicon Complexity Score
ecDNA 3 1.774840708
Image 3

Class Amplicon Complexity Score
BFB 4 1.31727259
Image 4

Class Amplicon Complexity Score
BFB 5 1.275019359
Image 5

Prediction

ecDNA: positive

Genes: NDUFS5P7;.


Prediction

No data