OACP4C_OESOPHAGUS


Available Data

  • Amplicon Architect Prediction

ID Value
ATCC None
DSMZ ACC-704
Cellosaurus None
Cosmic 1503362.0

Details

ecDNA Present (Y/N/P): No data

HSR Classification: No data

ATCC Karyotype: No data

DSMZ Karyotype: No data

Heterogeneity Indications and Other Notes: No data

Download Breakpoint Edges CSV

Prediction

ecDNA Amplicon Predicted: Y

Predicted Amplicon Classes: ['ecDNA', 'Complex non-cyclic', 'Linear amplification']

Predicted Genes on ecDNA

['AGR2', 'AGR3', 'TSPAN13', 'CACNA2D1', 'CACNA2D1-AS1', 'STEAP4', 'CAPRIN1', 'CYP7A1', 'LMO2', 'NAT10', 'UBXN2B', 'CASC11', 'CASC19', 'CASC21', 'CASC8', 'CCAT1', 'CCAT2', 'LRATD2', 'MYC', 'PCAT1', 'PCAT2', 'POU5F1B', 'PRNCR1', 'PVT1', 'TMEM75', 'EHF', 'C11orf49', 'CKAP5', 'F2', 'LRP4', 'LRP4-AS1', 'SNORD67', 'ZNF408', 'FLJ22447', 'HIF1A', 'HIF1A-AS1', 'HIF1A-AS2', 'HIF1A-AS3', 'PRKCH', 'SNAPC1', 'SYT16', 'TMEM30B', 'ANXA9', 'BNIPL', 'C1orf56', 'CDC42SE1', 'CGN', 'GABPB2', 'LYSMD1', 'MINDY1', 'MLLT11', 'PI4KB', 'PIP5K1A', 'POGZ', 'PRUNE1', 'PSMB4', 'PSMD4', 'SCNM1', 'SEMA6C', 'TMOD4', 'TNFAIP8L2', 'TNFAIP8L2-SCNM1', 'TUFT1', 'VPS72', 'ZNF687', 'ZNF687-AS1', 'BLMH', 'TMIGD1', 'CASC3', 'CDC6', 'CDK12', 'CSF3', 'ERBB2', 'GJD3', 'GRB7', 'GSDMA', 'GSDMB', 'IGFBP4', 'IKZF3', 'LRRC3C', 'MED24', 'MIEN1', 'MSL1', 'NEUROD2', 'NR1D1', 'ORMDL3', 'PGAP3', 'PNMT', 'PPP1R1B', 'PSMD3', 'RAPGEFL1', 'RARA', 'RARA-AS1', 'SNORD124', 'STARD3', 'TCAP', 'THRA', 'TNS4', 'TOP2A', 'WIPF2', 'ZPBP2', 'BCAM', 'BCL3', 'CBLC', 'CEACAM16', 'CEACAM19', 'NECTIN2', 'PTPN1', 'SMIM25', 'ACOT13', 'ALDH5A1', 'ARMH2', 'C6orf62', 'CHRDL2', 'GMNN', 'KCNE3', 'KIAA0319', 'LIPT2', 'PGM2L1', 'POLD3', 'RIPOR2', 'RNF169', 'TDP2', 'C1orf50', 'CLDN19', 'ERMAP', 'P3H1', 'SVBP', 'TMEM269', 'TMEM269-DT', 'ZNF691', 'FAM20B', 'ESRRG', 'FAM198B-AS1', 'GASK1B', 'TMEM144', 'BRD9', 'CLPTM1L', 'CTD-3080P12.3', 'LPCAT1', 'NKD2', 'SDHAP3', 'SLC12A7', 'SLC6A18', 'SLC6A19', 'SLC6A3', 'TERT', 'TRIP13', 'ZDHHC11', 'ZDHHC11B']

Predicted Features

Class Amplicon Complexity Score
ecDNA 10 0.498609413
Image 1

Class Amplicon Complexity Score
ecDNA 11 0.6696210956
Image 2

Class Amplicon Complexity Score
Complex non-cyclic 12 1.029575379
Image 3

Class Amplicon Complexity Score
ecDNA 13 0.4157094349
Image 4

Class Amplicon Complexity Score
ecDNA 13 0.9495372927
Image 5

Class Amplicon Complexity Score
ecDNA 14 0.6740707999
Image 6

Class Amplicon Complexity Score
Complex non-cyclic 15 0.722859944
Image 7

Class Amplicon Complexity Score
ecDNA 16 0.6828993546
Image 8

Class Amplicon Complexity Score
ecDNA 17 0.5824804644
Image 9

Class Amplicon Complexity Score
Linear amplification 18 0.0904277636
Image 10

Class Amplicon Complexity Score
ecDNA 19 1.042337619
Image 11

Class Amplicon Complexity Score
ecDNA 1 1.294481763
Image 12

Class Amplicon Complexity Score
Complex non-cyclic 20 1.4525725
Image 13

Class Amplicon Complexity Score
ecDNA 21 0.5900582672
Image 14

Class Amplicon Complexity Score
ecDNA 22 0.9350817761
Image 15

Class Amplicon Complexity Score
Linear amplification 23 0.6921866575
Image 16

Class Amplicon Complexity Score
ecDNA 24 0.582881415
Image 17

Class Amplicon Complexity Score
ecDNA 25 0.9430103923
Image 18

Class Amplicon Complexity Score
ecDNA 2 0.9818087571
Image 19

Class Amplicon Complexity Score
ecDNA 3 1.012971845
Image 20

Class Amplicon Complexity Score
ecDNA 4 0.6930743532
Image 21

Class Amplicon Complexity Score
ecDNA 5 0.6180885915
Image 22

Class Amplicon Complexity Score
Linear amplification 6 0.5482367006
Image 23

Class Amplicon Complexity Score
ecDNA 7 0.6831698918
Image 24

Class Amplicon Complexity Score
ecDNA 8 0.6870847703
Image 25

Class Amplicon Complexity Score
ecDNA 9 0.8270665072
Image 26

Prediction

ecDNA: None


Prediction

No data