Available Data

Vendor Karyotype
Amplicon Architect Prediction

ID	Value
ATCC	CRL-2969
DSMZ	ACC-579
Cellosaurus	NU-DUL-1
Cosmic	1330982.0

Karyotype Details

Property	Value
% Polyploidy	4.0
Ploidy Classification	hypodiploid
Modal Chromosome Number	45.0
Modal Range Numeric	35-45
Marker Chromosomes Average Field	2.0
Primary or Metastasis	None
Count of SV's	9

Details

ecDNA Present (Y/N/P): N

HSR Classification: N

ATCC Karyotype: 44, X (hypodiploid), +der(4)t(4;?)(q31;?). -6, -17, -18, -21, +2mar,der(1)t(1;?)(q32;?), del(4)(q25q31), del(5)(p12), del(6)(q21), del(8)(q24), der(11)t(11;?)(q21;?), der(12)t(12;?)(p13;?), der(14)t(14;?)(q13;), ter rea(19;21)(q13;q22)

DSMZ Karyotype: human hypodiploid karyotype with 4% polyploidy - 45<2n>X, -Y, der(X)t(X;13)(p11.2;q13), del(3)(q26-28), der(5)t(X;5)(q26;q21), del(6)(p21p22), del(6)(q22), der(8)t(8;14)(q24;q32), add(11)(q23-24), der(14)t(8;14)(q24;q32)t(14;13)(q32;?q14)t(13;X)(?q13;p11.2), der(17)t(17;18)(q22;q21.1), der(18)t(5;18)(q21;q21.1)inv(5)(q21;q35), der(19)t(?17;19)(q22;q13.2) - carries semi-cryptic t(8;14) effecting IGH-MYC rearrangement - resembles published karyotype

Heterogeneity Indications and Other Notes: carries semi-cryptic t(8;14) effecting IGH-MYC rearrangement - resembles published karyotype

Download Breakpoint Edges CSV

Prediction

ecDNA Amplicon Predicted: Y

Predicted Amplicon Classes: ['BFB', 'ecDNA']

Predicted Genes on ecDNA

['ALPK1', 'AP1AR', 'ARSB', 'BHMT', 'BHMT2', 'CMYA5', 'DMGDH', 'HOMER1', 'JMY', 'TENT2', 'TIFA']

Predicted Features

View Feature 1 - NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE ecDNA

Class	Amplicon	Complexity Score
ecDNA	1	0.5678237399

View Feature 2 - NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE BFB

Class	Amplicon	Complexity Score
BFB	1	1.271374327

Prediction

ecDNA: None

Prediction

No data