NCIN87_STOMACH


Available Data

  • Vendor Karyotype
  • ecDNA Presence Verification from Literature
  • Amplicon Architect Prediction
  • Shatterseek Prediction

ID Value
ATCC CRL-5822
DSMZ None
Cellosaurus NCI-N87
Cosmic 908461.0

Property Value
% Polyploidy None
Ploidy Classification diploid
Modal Chromosome Number 46.0
Modal Range Numeric None
Marker Chromosomes Average Field None
Primary or Metastasis Metastasis
Count of SV's 0

Details

ecDNA Present (Y/N/P): Y

Literature source: https://onlinelibrary.wiley.com/doi/full/10.1002/path.4439

HSR Classification: N

ATCC Karyotype: near diploid; DM were present in 64% of cells examined

DSMZ Karyotype: No data

Heterogeneity Indications and Other Notes: DM were present in 64% of cells

Download Breakpoint Edges CSV

Prediction

ecDNA Amplicon Predicted: N

Predicted Amplicon Classes: ['Linear amplification', 'BFB']

Predicted Genes on ecDNA

[]

Predicted Features

Class Amplicon Complexity Score
Linear amplification 1 0.561777564
Image 1

Class Amplicon Complexity Score
BFB 2 1.994677624
Image 2

Class Amplicon Complexity Score
Linear amplification 3 0.5962760967
Image 3

Prediction

ecDNA: None


Prediction

Shatterseek Prediction: High Confidence

Shatterseek High Confidence Chromosomes: 7

Shatterseek Low Confidence Chromosomes: 5, 11