NCIH841_LUNG


Available Data

  • Vendor Karyotype
  • ecDNA Presence Verification from Literature
  • Amplicon Architect Prediction
  • Shatterseek Prediction

ID Value
ATCC CRL-5845
DSMZ None
Cellosaurus NCI-H841
Cosmic 1240192.0

Property Value
% Polyploidy None
Ploidy Classification None
Modal Chromosome Number None
Modal Range Numeric None
Marker Chromosomes Average Field None
Primary or Metastasis Metastasis
Count of SV's 3

Details

ecDNA Present (Y/N/P): N

Literature source: https://aacrjournals.org/cancerdiscovery/article/13/4/928/725029/Extrachromosomal-DNA-Amplification-Contributes-to

HSR Classification: N

ATCC Karyotype: t(2p,3p), t(3q,9q)

DSMZ Karyotype: No data

Heterogeneity Indications and Other Notes: No data

Download Breakpoint Edges CSV

Prediction

ecDNA Amplicon Predicted: N

Predicted Amplicon Classes: ['Linear amplification', 'Complex non-cyclic']

Predicted Genes on ecDNA

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Predicted Features

Class Amplicon Complexity Score
Linear amplification 1 1.201508345
Image 1

Class Amplicon Complexity Score
Linear amplification 2 0.8901003358
Image 2

Class Amplicon Complexity Score
Complex non-cyclic 3 1.35775301
Image 3

Class Amplicon Complexity Score
Linear amplification 4 1.014801115
Image 4

Prediction

ecDNA: None


Prediction

Shatterseek Prediction: Low Confidence

Shatterseek High Confidence Chromosomes: None

Shatterseek Low Confidence Chromosomes: 17