Available Data

Vendor Karyotype
Amplicon Architect Prediction
Shatterseek Prediction

ID	Value
ATCC	CRL-5835
DSMZ	None
Cellosaurus	NCI-H650
Cosmic	722066.0

Karyotype Details

Property	Value
% Polyploidy	None
Ploidy Classification	hypotetraploid
Modal Chromosome Number	90.0
Modal Range Numeric	54-178
Marker Chromosomes Average Field	None
Primary or Metastasis	Metastasis
Count of SV's	1

Details

ecDNA Present (Y/N/P): No data

HSR Classification: No data

ATCC Karyotype: modal number = 90; range = 54 to 178; del(p14-p23), inv(3p)

DSMZ Karyotype: No data

Heterogeneity Indications and Other Notes: No data

Download Breakpoint Edges CSV

Prediction

ecDNA Amplicon Predicted: Y

Predicted Amplicon Classes: ['Complex non-cyclic', 'ecDNA', 'Linear amplification']

Predicted Genes on ecDNA

['LPCAT1', 'SDHAP3', 'SLC6A3', 'ITGA1', 'ITGA2', 'MOCS2', 'PELO', 'ABCB9', 'ARL6IP4', 'C12orf65', 'CDK2AP1', 'DDX55', 'EIF2B1', 'GTF2H3', 'KMT5A', 'MPHOSPH9', 'OGFOD2', 'PITPNM2', 'PITPNM2-AS1', 'RILPL1', 'RILPL2', 'SBNO1', 'SBNO1-AS1', 'SNORA9B', 'SNRNP35', 'TMED2', 'TMED2-DT']

Predicted Features

View Feature 1 - NCIH650_LUNG Complex non-cyclic

Class	Amplicon	Complexity Score
Complex non-cyclic	1	2.080166173

View Feature 2 - NCIH650_LUNG ecDNA

Class	Amplicon	Complexity Score
ecDNA	2	0.6462204217

View Feature 3 - NCIH650_LUNG ecDNA

Class	Amplicon	Complexity Score
ecDNA	3	0.6582924353

View Feature 4 - NCIH650_LUNG ecDNA

Class	Amplicon	Complexity Score
ecDNA	4	0.6409362817

View Feature 5 - NCIH650_LUNG Complex non-cyclic

Class	Amplicon	Complexity Score
Complex non-cyclic	5	1.092750019

View Feature 6 - NCIH650_LUNG ecDNA

Class	Amplicon	Complexity Score
ecDNA	6	0.6925370858

View Feature 7 - NCIH650_LUNG Linear amplification

Class	Amplicon	Complexity Score
Linear amplification	7	0.6581859043

Prediction

ecDNA: None

Prediction

Shatterseek Prediction: Low Confidence

Shatterseek High Confidence Chromosomes: None

Shatterseek Low Confidence Chromosomes: 17