NCIH524_LUNG


Available Data

  • ecDNA Presence Verification from Literature
  • Amplicon Architect Prediction
  • Circle Hunter Prediction
  • Shatterseek Prediction

ID Value
ATCC CRL-5831
DSMZ None
Cellosaurus NCI-H524
Cosmic 908483.0

Details

ecDNA Present (Y/N/P): Y

Literature source: https://pubmed.ncbi.nlm.nih.gov/11165324/
https://aacrjournals.org/cancerdiscovery/article/13/4/928/725029/Extrachromosomal-DNA-Amplification-Contributes-to

HSR Classification: No data

ATCC Karyotype: No data

DSMZ Karyotype: No data

Heterogeneity Indications and Other Notes: No data

Download Breakpoint Edges CSV

Prediction

ecDNA Amplicon Predicted: Y

Predicted Amplicon Classes: ['ecDNA']

Predicted Genes on ecDNA

['C3orf85', 'DPPA2', 'GUCA1C', 'MORC1', 'MORC1-AS1', 'CASC11', 'CASC21', 'CASC8', 'CCAT2', 'MYC', 'POU5F1B', 'PVT1', 'SNTB1']

Predicted Features

Class Amplicon Complexity Score
ecDNA 1 0.679412731
Image 1

Class Amplicon Complexity Score
ecDNA 2 2.078677005
Image 2

Prediction

ecDNA: positive

Genes: KNOP1P5;.;RFPL4AP5


Prediction

Shatterseek Prediction: Low Confidence

Shatterseek High Confidence Chromosomes: None

Shatterseek Low Confidence Chromosomes: 2