NCIH508_LARGE_INTESTINE


Available Data

  • Vendor Karyotype
  • ecDNA Presence Verification from Literature
  • Amplicon Architect Prediction

ID Value
ATCC CCL-253
DSMZ None
Cellosaurus NCI-H508
Cosmic 908442.0

Property Value
% Polyploidy None
Ploidy Classification hypertetraploid
Modal Chromosome Number 102.0
Modal Range Numeric 71-131
Marker Chromosomes Average Field None
Primary or Metastasis Metastasis
Count of SV's 0

Details

ecDNA Present (Y/N/P): Y

Literature source: https://cancerres.aacrjournals.org/content/47/24_Part_1/6710.full-text.pdf

HSR Classification: N

ATCC Karyotype: modal number = 102; range = 71 to 131; most cells have DM's

DSMZ Karyotype: No data

Heterogeneity Indications and Other Notes: most cells have DM's

Download Breakpoint Edges CSV

Prediction

ecDNA Amplicon Predicted: Y

Predicted Amplicon Classes: ['ecDNA']

Predicted Genes on ecDNA

['AKAP6', 'AP4S1', 'ARHGAP5', 'ARHGAP5-AS1', 'COCH', 'DTD2', 'FOXG1', 'FOXG1-AS1', 'G2E3', 'G2E3-AS1', 'GPR33', 'HEATR5A', 'HECTD1', 'NUBPL', 'PRKD1', 'SCFD1', 'STRN3']

Predicted Features

Class Amplicon Complexity Score
ecDNA 1 1.540110232
Image 1

Prediction

ecDNA: None


Prediction

No data