NCIH460_LUNG


Available Data

  • Vendor Karyotype
  • ecDNA Presence Verification from Literature
  • Amplicon Architect Prediction

ID Value
ATCC HTB-177
DSMZ ACC-737
Cellosaurus NCI-H460
Cosmic 905943.0

Property Value
% Polyploidy 1.7
Ploidy Classification mix(hypotriploid, hyperdiploid)
Modal Chromosome Number 57.0
Modal Range Numeric 53-65
Marker Chromosomes Average Field 7.0
Primary or Metastasis Metastasis
Count of SV's 4

Details

ecDNA Present (Y/N/P): Y

Literature source: https://www.nature.com/articles/nature21356

HSR Classification: N

ATCC Karyotype: modal numbr = 57; range = 53 to 65.This is a hypotriploid human cell line. The modal chromosome number is 57 although cells with 58 chromosomes occurred with a comparable frequency. The frequency of higher ploidies was 1.7%. Seven marker chromosomes, der(9)t(1;9)(q21;p24), der(9)t(7;9)(p11;p22), t(10q14q), der(16)t(7;16)(q11.23;q22), a small ring (about 1/2 the size of a G chromosome) and two others, were common to all cells. Three other markers were found in some cells only. The markers, t(7;9) and t(7;16) were mostly paired. Normal N9 was absent, and N7 and N16 had only a single copy per cell. Two copies each of the X and the Y were present in all cells.

DSMZ Karyotype: No data

Heterogeneity Indications and Other Notes: a small ring (about 1/2 the size of a G chromosome)

Download Breakpoint Edges CSV

Prediction

ecDNA Amplicon Predicted: Y

Predicted Amplicon Classes: ['ecDNA']

Predicted Genes on ecDNA

['CASC11', 'CCDC26', 'MYC', 'PVT1', 'TMEM75']

Predicted Features

Class Amplicon Complexity Score
ecDNA 1 0.791537713
Image 1

Class Amplicon Complexity Score
ecDNA 2 0.8944380356
Image 2

Prediction

ecDNA: None


Prediction

No data