NCIH446_LUNG


Available Data

  • Vendor Karyotype
  • ecDNA Presence Verification from Literature
  • Amplicon Architect Prediction

ID Value
ATCC HTB-171
DSMZ None
Cellosaurus NCI-H446
Cosmic 688023.0

Property Value
% Polyploidy 2.5
Ploidy Classification hypertriploid
Modal Chromosome Number 74.0
Modal Range Numeric 70-80
Marker Chromosomes Average Field 25.0
Primary or Metastasis Metastasis
Count of SV's 0

Details

ecDNA Present (Y/N/P): Y

Literature source: https://aacrjournals.org/cancerdiscovery/article/13/4/928/725029/Extrachromosomal-DNA-Amplification-Contributes-to

HSR Classification: Y

ATCC Karyotype: This is a hypertriploid human cell line. The modal chromosome number is 74, occurring at 22% with polyploidy at 2.5%. Over 25 markers were common to most cells including inv(1)(p32q21), der(1)t(1:4)(q42;q11), i(5q), t(2p13q) and der(19)t(7;HSR;19) (q11;HSR;p13.3). Structurally normal N1 and N13 were absent and normal N4, N5 and N10 were mostly single copies per cell. There were two X/Y pairs per cell.

DSMZ Karyotype: No data

Heterogeneity Indications and Other Notes: N5 and N10 were mostly single copies per cell. There were two X/Y pairs per cell

Download Breakpoint Edges CSV

Prediction

ecDNA Amplicon Predicted: Y

Predicted Amplicon Classes: ['ecDNA']

Predicted Genes on ecDNA

['UNC5D', 'CASC11', 'CASC19', 'CASC21', 'CASC8', 'CCAT1', 'CCAT2', 'LRATD2', 'MYC', 'PCAT1', 'PCAT2', 'POU5F1B', 'PRNCR1', 'PVT1']

Predicted Features

Class Amplicon Complexity Score
ecDNA 1 0.6928255169
Image 1

Class Amplicon Complexity Score
ecDNA 2 1.142122023
Image 2

Prediction

ecDNA: None


Prediction

No data