NCIH23_LUNG


Available Data

  • ecDNA Presence Verification from Literature
  • Amplicon Architect Prediction

ID Value
ATCC CRL-5800
DSMZ None
Cellosaurus NCI-H23
Cosmic 905942.0

Details

ecDNA Present (Y/N/P): N

Literature source: https://www.nature.com/articles/nature21356

HSR Classification: No data

ATCC Karyotype: No data

DSMZ Karyotype: No data

Heterogeneity Indications and Other Notes: No data

Download Breakpoint Edges CSV

Prediction

ecDNA Amplicon Predicted: Y

Predicted Amplicon Classes: ['Linear amplification', 'ecDNA']

Predicted Genes on ecDNA

['CASC11', 'CASC19', 'CASC21', 'CASC8', 'CCAT1', 'CCAT2', 'CCDC26', 'MYC', 'PCAT1', 'PCAT2', 'POU5F1B', 'PRNCR1', 'PVT1', 'TMEM75']

Predicted Features

Class Amplicon Complexity Score
Linear amplification 10 0.897630145
Image 1

Class Amplicon Complexity Score
Linear amplification 11 0.0
Image 2

Class Amplicon Complexity Score
Linear amplification 1 0.6513578012
Image 3

Class Amplicon Complexity Score
Linear amplification 2 0.7821822704
Image 4

Class Amplicon Complexity Score
Linear amplification 3 0.4974781171
Image 5

Class Amplicon Complexity Score
Linear amplification 4 0.6617801763
Image 6

Class Amplicon Complexity Score
Linear amplification 5 3e-10
Image 7

Class Amplicon Complexity Score
Linear amplification 6 5e-10
Image 8

Class Amplicon Complexity Score
Linear amplification 7 0.6754527779
Image 9

Class Amplicon Complexity Score
ecDNA 8 0.9417451406
Image 10

Class Amplicon Complexity Score
Linear amplification 9 0.0980390003
Image 11

Prediction

ecDNA: None


Prediction

No data