Available Data

ecDNA Presence Verification from Literature
Amplicon Architect Prediction
Shatterseek Prediction

ID	Value
ATCC	CRL-5985
DSMZ	None
Cellosaurus	NCI-H2122
Cosmic	722046.0

Details

ecDNA Present (Y/N/P): Y

Literature source: https://www.sciencedirect.com/science/article/pii/S0165460805001561#bib10

HSR Classification: No data

ATCC Karyotype: No data

DSMZ Karyotype: No data

Heterogeneity Indications and Other Notes: No data

Download Breakpoint Edges CSV

Prediction

ecDNA Amplicon Predicted: Y

Predicted Amplicon Classes: ['ecDNA']

Predicted Genes on ecDNA

['ADGRB2', 'C1orf109', 'C1orf122', 'C1orf94', 'CASC11', 'CDCA8', 'CSMD2', 'DLGAP3', 'MANEAL', 'MTF1', 'MYC', 'PCAT1', 'SFPQ', 'SPOCD1', 'TMEM35B', 'TMEM75', 'YRDC', 'ZMYM6']

Predicted Features

View Feature 1 - NCIH2122_LUNG ecDNA

Class	Amplicon	Complexity Score
ecDNA	1	1.22561393

Prediction

ecDNA: None

Prediction

Shatterseek Prediction: High Confidence

Shatterseek High Confidence Chromosomes: 1, 2

Shatterseek Low Confidence Chromosomes: 7, 16