NCIH2066_LUNG


Available Data

  • ecDNA Presence Verification from Literature
  • Amplicon Architect Prediction

ID Value
ATCC CRL-5917
DSMZ None
Cellosaurus NCI-H2066
Cosmic 1330973.0

Details

ecDNA Present (Y/N/P): N

Literature source: https://aacrjournals.org/cancerdiscovery/article/13/4/928/725029/Extrachromosomal-DNA-Amplification-Contributes-to

HSR Classification: No data

ATCC Karyotype: No data

DSMZ Karyotype: No data

Heterogeneity Indications and Other Notes: No data

Download Breakpoint Edges CSV

Prediction

ecDNA Amplicon Predicted: Y

Predicted Amplicon Classes: ['ecDNA', 'Linear amplification', 'Complex non-cyclic', 'BFB']

Predicted Genes on ecDNA

['PLXND1', 'TMCC1', 'CLRN1-AS1', 'HRH4', 'IMPACT', 'C5orf34', 'NNT', 'NNT-AS1', 'PAIP1', 'TMEM267', 'TPPP', 'ZDHHC11', 'ZDHHC11B', 'CCSER1']

Predicted Features

Class Amplicon Complexity Score
Linear amplification 10 0.0
Image 1

Class Amplicon Complexity Score
Complex non-cyclic 11 1.101484208
Image 2

Class Amplicon Complexity Score
BFB 12 0.6296139844
Image 3

Class Amplicon Complexity Score
ecDNA 1 0.6597386545
Image 4

Class Amplicon Complexity Score
ecDNA 2 0.6224271773
Image 5

Class Amplicon Complexity Score
ecDNA 3 0.6509889809
Image 6

Class Amplicon Complexity Score
ecDNA 3 0.6378550967
Image 7

Class Amplicon Complexity Score
ecDNA 3 1.163844771
Image 8

Class Amplicon Complexity Score
ecDNA 3 1.267425827
Image 9

Class Amplicon Complexity Score
ecDNA 4 0.5605381079
Image 10

Class Amplicon Complexity Score
Linear amplification 6 0.7094167163
Image 11

Class Amplicon Complexity Score
Complex non-cyclic 7 1.403087392
Image 12

Class Amplicon Complexity Score
Linear amplification 8 0.6834537496
Image 13

Class Amplicon Complexity Score
Linear amplification 9 0.7278943852
Image 14

Prediction

ecDNA: None


Prediction

No data