NCIH1876_LUNG


Available Data

  • ecDNA Presence Verification from Literature
  • Amplicon Architect Prediction

ID Value
ATCC CRL-5902
DSMZ None
Cellosaurus NCI-H1876
Cosmic 1330972.0

Details

ecDNA Present (Y/N/P): N

Literature source: https://aacrjournals.org/cancerdiscovery/article/13/4/928/725029/Extrachromosomal-DNA-Amplification-Contributes-to

HSR Classification: No data

ATCC Karyotype: No data

DSMZ Karyotype: No data

Heterogeneity Indications and Other Notes: trics, rings, and ABRs

Download Breakpoint Edges CSV

Prediction

ecDNA Amplicon Predicted: Y

Predicted Amplicon Classes: ['ecDNA', 'Linear amplification']

Predicted Genes on ecDNA

['BMP8B', 'CAP1', 'COL9A2', 'MFSD2A', 'MYCL', 'OXCT2', 'PPIE', 'PPT1', 'RLF', 'SMAP2', 'TMCO2', 'TRIT1', 'ZFP69', 'ZFP69B', 'ZMPSTE24', 'VAMP7']

Predicted Features

Class Amplicon Complexity Score
ecDNA 1 0.6807724991
Image 1

Class Amplicon Complexity Score
Linear amplification 2 0.7142115503
Image 2

Class Amplicon Complexity Score
Linear amplification 3 0.7265938358
Image 3

Class Amplicon Complexity Score
ecDNA 4 0.6156744184
Image 4

Prediction

ecDNA: None


Prediction

No data