NCIH1836_LUNG


Available Data

  • Vendor Karyotype
  • ecDNA Presence Verification from Literature
  • Amplicon Architect Prediction

ID Value
ATCC CRL-5898
DSMZ None
Cellosaurus NCI-H1836
Cosmic 1240182.0

Property Value
% Polyploidy None
Ploidy Classification None
Modal Chromosome Number None
Modal Range Numeric None
Marker Chromosomes Average Field 1.0
Primary or Metastasis Primary
Count of SV's 0

Details

ecDNA Present (Y/N/P): Y

Literature source: https://aacrjournals.org/cancerdiscovery/article/13/4/928/725029/Extrachromosomal-DNA-Amplification-Contributes-to

HSR Classification: N

ATCC Karyotype: del(p11-qter)

DSMZ Karyotype: No data

Heterogeneity Indications and Other Notes: No data

Download Breakpoint Edges CSV

Prediction

ecDNA Amplicon Predicted: Y

Predicted Amplicon Classes: ['ecDNA', 'Linear amplification', 'Complex non-cyclic']

Predicted Genes on ecDNA

['BMP8A', 'BMP8B', 'C1orf109', 'CAP1', 'CDCA8', 'CITED4', 'CTPS1', 'EPHA10', 'HEYL', 'HPCAL4', 'KCNQ4', 'KIAA0754', 'MACF1', 'MFSD2A', 'MYCL', 'NFYC', 'NT5C1A', 'OXCT2', 'OXCT2P1', 'PABPC4', 'PABPC4-AS1', 'PPIE', 'PPIEL', 'PPT1', 'SCMH1', 'SLFNL1', 'SLFNL1-AS1', 'SNORA55', 'TRIT1']

Predicted Features

Class Amplicon Complexity Score
ecDNA 1 1.230790946
Image 1

Class Amplicon Complexity Score
Linear amplification 2 0.2741322332
Image 2

Class Amplicon Complexity Score
Complex non-cyclic 3 1.200520087
Image 3

Class Amplicon Complexity Score
Linear amplification 4 0.6912968732
Image 4

Class Amplicon Complexity Score
Linear amplification 5 1.256440963
Image 5

Class Amplicon Complexity Score
Linear amplification 6 0.0
Image 6

Prediction

ecDNA: None


Prediction

No data