NCIH1792_LUNG


Available Data

  • Amplicon Architect Prediction
  • Shatterseek Prediction

ID Value
ATCC CRL-5895
DSMZ None
Cellosaurus NCI-H1792
Cosmic 724868.0

Details

ecDNA Present (Y/N/P): No data

HSR Classification: No data

ATCC Karyotype: No data

DSMZ Karyotype: No data

Heterogeneity Indications and Other Notes: No data

Download Breakpoint Edges CSV

Prediction

ecDNA Amplicon Predicted: Y

Predicted Amplicon Classes: ['ecDNA', 'Linear amplification', 'Complex non-cyclic', 'BFB']

Predicted Genes on ecDNA

['LEMD3', 'MSRB3', 'ARHGEF33', 'DHX57', 'GEMIN6', 'MORN2', 'SOS1', 'SRSF7', 'CASC11', 'MYC', 'PVT1', 'TMEM75']

Predicted Features

Class Amplicon Complexity Score
Linear amplification 10 1.183710836
Image 1

Class Amplicon Complexity Score
ecDNA 11 0.5125108224
Image 2

Class Amplicon Complexity Score
Linear amplification 12 0.0054891068
Image 3

Class Amplicon Complexity Score
Complex non-cyclic 13 1.897322433
Image 4

Class Amplicon Complexity Score
Linear amplification 14 3.72e-08
Image 5

Class Amplicon Complexity Score
ecDNA 1 0.9167560605
Image 6

Class Amplicon Complexity Score
BFB 3 1.130458321
Image 7

Class Amplicon Complexity Score
Linear amplification 4 0.8286580433
Image 8

Class Amplicon Complexity Score
Complex non-cyclic 5 1.530597153
Image 9

Class Amplicon Complexity Score
BFB 6 0.8241913747
Image 10

Class Amplicon Complexity Score
Complex non-cyclic 7 1.319571612
Image 11

Class Amplicon Complexity Score
ecDNA 8 0.3702789154
Image 12

Class Amplicon Complexity Score
Complex non-cyclic 9 1.456255226
Image 13

Prediction

ecDNA: None


Prediction

Shatterseek Prediction: High Confidence

Shatterseek High Confidence Chromosomes: 20, 21

Shatterseek Low Confidence Chromosomes: 3, 10, 14