Available Data

Vendor Karyotype
ecDNA Presence Verification from Literature
Amplicon Architect Prediction

ID	Value
ATCC	CRL-5888
DSMZ	None
Cellosaurus	NCI-H1694
Cosmic	688006.0

Karyotype Details

Property	Value
% Polyploidy	None
Ploidy Classification	None
Modal Chromosome Number	None
Modal Range Numeric	None
Marker Chromosomes Average Field	1.0
Primary or Metastasis	Metastasis
Count of SV's	0

Details

ecDNA Present (Y/N/P): Y

Literature source: https://aacrjournals.org/cancerdiscovery/article/13/4/928/725029/Extrachromosomal-DNA-Amplification-Contributes-to

HSR Classification: N

ATCC Karyotype: del(p21-pter)

DSMZ Karyotype: No data

Heterogeneity Indications and Other Notes: No data

Download Breakpoint Edges CSV

Prediction

ecDNA Amplicon Predicted: Y

Predicted Amplicon Classes: ['ecDNA']

Predicted Genes on ecDNA

['AKT3', 'BMP8A', 'BMP8B', 'C1orf198', 'CD84', 'COPA', 'DISC1', 'HEYL', 'HPCAL4', 'KIAA0754', 'MACF1', 'MFSD2A', 'MYCL', 'NCSTN', 'NT5C1A', 'OXCT2', 'OXCT2P1', 'PABPC4', 'PABPC4-AS1', 'PBX1', 'PPIE', 'PPIEL', 'SDCCAG8', 'SLAMF1', 'SLAMF6', 'SNORA55', 'SNRPD2P2', 'SUMO1P3', 'TRIT1', 'TSNAX', 'VANGL2', 'ARHGEF2', 'RXFP4', 'SSR2', 'UBQLN4']

Predicted Features

View Feature 1 - NCIH1694_LUNG ecDNA

Class	Amplicon	Complexity Score
ecDNA	1	1.425553529

View Feature 2 - NCIH1694_LUNG ecDNA

Class	Amplicon	Complexity Score
ecDNA	2	0.5773941706

Prediction

ecDNA: None

Prediction

No data