Available Data

ecDNA Presence Verification from Literature
Amplicon Architect Prediction
Circle Hunter Prediction
Shatterseek Prediction

ID	Value
ATCC	CRL-5872
DSMZ	None
Cellosaurus	NCI-H1437
Cosmic	687794.0

Details

ecDNA Present (Y/N/P): Y

Literature source: https://www.sciencedirect.com/science/article/pii/S0165460805001561#bib10

HSR Classification: No data

ATCC Karyotype: No data

DSMZ Karyotype: No data

Heterogeneity Indications and Other Notes: No data

Download Breakpoint Edges CSV

Prediction

ecDNA Amplicon Predicted: Y

Predicted Amplicon Classes: ['Linear amplification', 'Complex non-cyclic', 'ecDNA']

Predicted Genes on ecDNA

['BRD9', 'CEP72', 'CLPTM1L', 'CTD-2194D22.4', 'CTD-3080P12.3', 'IRX4', 'LPCAT1', 'MRPL36', 'NDUFS6', 'NKD2', 'SDHAP3', 'SLC12A7', 'SLC6A18', 'SLC6A19', 'SLC6A3', 'TERT', 'TPPP', 'TRIP13', 'ZDHHC11', 'ZDHHC11B']

Predicted Features

View Feature 1 - NCIH1437_LUNG Linear amplification

Class	Amplicon	Complexity Score
Linear amplification	1	0.0

View Feature 2 - NCIH1437_LUNG Linear amplification

Class	Amplicon	Complexity Score
Linear amplification	2	0.6545246129

View Feature 3 - NCIH1437_LUNG Linear amplification

Class	Amplicon	Complexity Score
Linear amplification	3	0.0

View Feature 4 - NCIH1437_LUNG Complex non-cyclic

Class	Amplicon	Complexity Score
Complex non-cyclic	4	0.9160731216

View Feature 5 - NCIH1437_LUNG ecDNA

Class	Amplicon	Complexity Score
ecDNA	5	1.043179248

Prediction

ecDNA: negative

Prediction

Shatterseek Prediction: High Confidence

Shatterseek High Confidence Chromosomes: 2, 9

Shatterseek Low Confidence Chromosomes: 8